Tpod037763.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000009.1:118690402-118712577[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.7 1.3e+02 5.1 0.1 11 23 89 101 86 101 0.91
2 25 0.0028 0.54 12.6 2.2 2 22 106 126 105 130 0.93
3 25 0.00091 0.18 14.1 0.8 1 23 135 158 135 158 0.97
4 25 0.01 2 10.8 9.3 1 23 194 216 194 216 0.99
5 25 0.00074 0.14 14.4 0.5 2 23 223 245 222 245 0.90
6 25 2.3e-05 0.0045 19.1 0.1 1 23 251 273 251 273 0.94
7 25 1.8e-05 0.0034 19.5 4.7 1 23 279 301 279 301 0.98
8 25 0.00018 0.034 16.4 2.9 1 23 307 329 307 329 0.98
9 25 0.19 36 6.8 1.6 1 23 360 383 360 383 0.94
10 25 0.0027 0.52 12.6 7.2 1 23 495 517 495 517 0.99
11 25 1.9e-05 0.0036 19.4 1.4 1 23 523 546 523 546 0.96
12 25 5.5e-05 0.011 18.0 0.8 1 23 552 574 552 574 0.98
13 25 4.9e-05 0.0094 18.1 2.0 2 23 581 602 580 602 0.94
14 25 0.003 0.58 12.5 2.7 1 23 624 646 624 646 0.96
15 25 9.5e-06 0.0018 20.4 1.2 1 23 652 674 652 674 0.98
16 25 1.7e-05 0.0033 19.6 1.3 3 23 734 755 733 755 0.97
17 25 0.00099 0.19 14.0 1.5 1 23 760 782 760 782 0.97
18 25 0.0031 0.6 12.5 1.8 1 23 820 842 820 842 0.94
19 25 0.00086 0.17 14.2 3.2 1 23 865 887 865 887 0.98
20 25 0.001 0.19 14.0 5.8 1 23 893 916 893 916 0.96
21 25 8.9e-05 0.017 17.3 0.1 1 23 922 944 922 944 0.96
22 25 1.9e-05 0.0037 19.4 2.9 1 23 950 972 950 972 0.97
23 25 0.0016 0.31 13.4 3.2 1 23 978 1000 978 1000 0.97
24 25 0.037 7.2 9.1 3.6 1 20 1006 1025 1006 1028 0.93
25 25 3.4e-05 0.0065 18.6 2.2 1 23 1034 1057 1034 1057 0.97

Sequence Information

Coding Sequence
ATGTTCGCAATGCCGAAATGGTCCGCTGGGGCAATGTTCCTTGACACTTGGGCGTTTCTCGGCAACATCAATTCTAAGTGGGAAGAATCATGTACATTGGGAGCAGTTCCTAAACAGAGAAGTGTGCATAGAAATGGTGTTGGAAAACAATCTGAGATTAAGTGTAAAGTTAAGACTTTTCACAGTCGGCCATTGGCTCCCAATTATGATTCAATGCTATCCAAGCTACAAAAGGATGATGACACTTTGGCTACAGAAGGTCTTTCTCGTAAGTTTGATTTAGAACGACACATATTGACGCATAACAAGACACTTCAGTGCAGCAAGTGCAACACTACCTTCCCCGGAAAGAAGAGTTTACTGACCCACATAAATACAGATTGTTCCCATGATGTATTCGTCTATCCTTGCCCGTTGTGTGGCAGACTGTTCGGTAGACACTATGATATGTTGCGGCACAAGAAAGTGCTTCATGCTCAGACGCATGAGACCCCAGTGGACATAGACCAGCTGACCACACTTGTGCGGCAACAACAAGACATTGAATCGGCGCGTGAGCTGGTTGATGGACGCTGGTTGTACAGGTGTCATCAATGCCACCGACACACTCGAAACAGATACGCCTACCTACGCCATCTCCGCATCCACACTGGAGAGAAGCCGTTAACTTGCCATGTATGCGGTAAACAGTTTCGAATCAAAGAAGTTCTTCGAAAGCATATTGGTGAGGTTCATGAACGTCACAAGAACTTCCTCTGTAGTATCTGTGGCAAGGCTTTTCCGAGTAACTCTGCCTTGAAAGACCATAGCCTCATTCATTCAGAGGAGCGGCCATTTGTGTGCCACATGTGCGGAAAGGCTTTCAAGTCGGGGAGCTGCCTGAACAGTCATATGAGGTTCCACGAGAGGAAAACTCTCCACAAATGTCCACAATGCGATAAAGAGTTTGTTACTCGACAGAGTATGTATCGGCATTCCCGCATCCATTTGGTGGCCTCGGTCCAAACGACAACATTCGTCCGCAAGGGGAAAACTCTAGAAGATTCAATGGATATCAAGATTGAAGAACAGACTAATCATAACTGCGATTATTGTCATTCCCTGTTTGCCGACAAGCGTGAACTAGGGGTGCATCTCGCCAGCACACACTCAAAGTTGGTGTTCCACTGCGACAAATGCAACGAGGTCATAGTCGATGGCAGTAAGAGTGAGTTTGTGAAGCACATGCAAGACCACGGTGAAGATGTTAAACACAATCAACCCTTGAAGTATGACATGAAAAAACATGAGTGCAAACATTCTGAAGAAGAGAAACCAAGGGCCTGTAAAGAAAAGGTGCTGGTGGATGAAGATGGGGACTACAGCTATCTTTTGAGTCACACTAAACTCCCAGCAGCAAAAGGCAAGTCATCTCTCACGTCTGTTCCAGGAGAGGATGATAGTTTGTCTGATAACAGAGTGATGGTCGGAGATGTTGCGTTCTATCGCTGTGGTAACTGTAACAAGCACTTCCATTCACGGTATCTCTTTGTGCGTCACCGGCGCATTCACACAGGAGAGAAGCCGTTCACATGCCATGTCTGTGGCAAGCAGTTTCGCATCACTGTCCAGCTGAACCGCCACATTCGTGATGTCCACGAGGGAATCAAGAACTATCCTTGTGATATCTGTGGCCGCAAATTCGCTAATAGTCATGCACGCAACGATCACCGCCGCATCCACACAGGAGAACGTCCGTGTGTGTGTCACCTCTGTGGCAAGGCATTTAAGACAAAGGCGTCACTGTTTGTCCATTCAAAATTCCATCGTGGTTTCCGTATGCGGCAGCAGCTTAATTCGCATGTGTTGCTACACACAGGCGAGAAACCTCATATATGCCAGTTTTGTAGCAAGAGTTTTCGGCTGAGTAAGACGCTCAAGGATCATGTGCTTATACACGTTAATAAAGGGAGCTATGAGTGTGCTGAGTGTGGCAAGCACTTTGCGCAGGAACGTTACTTGAAGAACCATGCCAGGAGTCATCGTGTCAATAGAGTTCAGGACATTCATTTGAATCCCGACACTTACACAGGACATCTGTTCCGCGCAGCCCTTCTACATGCACCACTCAAAGTATCCCACCAAGCTAATGTCAAAGTGAATGACGTTCCACCTCTCCTTGTCAAGACTGAAGGGGAGGAGGAACCGTTAAAAGAACTGTGCTCTCATTGTGGTGCCACATTCTCCCGCAAGAGTGAGCTGGCAACTCACATTACCAAAGATCACTCGGTCGACATGTTCCATTGTGAGATGTGTGACAAGATTCTCAAGAACAGAAAGTCATTTGTGGTCCACATAAGAGCCCACGGTGGCTCCTTAGTTTCGCATTGGAGCAGTACAGCTGGGGTCAAGTCTTGCAAGGGTCAGAAAGCACTGTCACACACATTGATGCTTGGCAAGGACTTACCACaagccaattttttttgttcagttTGTTTAAAGCGTTTCAAGACTgaaatatctttgaaaaaacATGAGAGCCTTCACGGTGCACTTGAAAATGTTGAAGGGAAGAAAGAGAAACAGAGGCATAGAGCAAACCCAAATGTTTTATATTCATGCGAAAAGTGTGGAAAAAGGTTTGGCATGAAGATAAGTTTCCTGAAGCATGTGCGCCACCACACGGGCGAAAAACCGTACACGTGTCACATTTGTGGGAAACAATTTACACACACAGGTGGGCTCTACTACCACCTTAAACACGTGCACGCTGGCATCAAGAATCACGCTTGCGACATCTGTGGCCGACCCTTTGCTCTCAAGGCTGCCTTGGAGGACCACCGACGAATCCATACGGGCGAGCGCCCTTTCGTGTGCCATTTTTGTGGTAAATCGTTCAAGAGCAAGGCTTCACTTTACATCCACAATAAAATCCACTCTAACTCCTTTCCGCACTCATGTACATACTGCGACAAGAGGTTCAGATGGCGGCAACAGCTGCTGGCCCATCTCACCACACATACGGGAGAGAAGAACCACATATGTGATGTGTGTGGGCGAGGTTTTGGTGTCAAGAATGACCTGACACGCCACAAACACTGCCATTCGGAGGTCAAACCCCATGAGTGCACTGTATGCGGCATCAGCTTTGGCCAGAGAAGGTACCTTAGGAACCACCTGAAAACACGCCATGATCTTCCCGAACCAGTGGCGCTCATTGTGGTCTGA
Protein Sequence
MFAMPKWSAGAMFLDTWAFLGNINSKWEESCTLGAVPKQRSVHRNGVGKQSEIKCKVKTFHSRPLAPNYDSMLSKLQKDDDTLATEGLSRKFDLERHILTHNKTLQCSKCNTTFPGKKSLLTHINTDCSHDVFVYPCPLCGRLFGRHYDMLRHKKVLHAQTHETPVDIDQLTTLVRQQQDIESARELVDGRWLYRCHQCHRHTRNRYAYLRHLRIHTGEKPLTCHVCGKQFRIKEVLRKHIGEVHERHKNFLCSICGKAFPSNSALKDHSLIHSEERPFVCHMCGKAFKSGSCLNSHMRFHERKTLHKCPQCDKEFVTRQSMYRHSRIHLVASVQTTTFVRKGKTLEDSMDIKIEEQTNHNCDYCHSLFADKRELGVHLASTHSKLVFHCDKCNEVIVDGSKSEFVKHMQDHGEDVKHNQPLKYDMKKHECKHSEEEKPRACKEKVLVDEDGDYSYLLSHTKLPAAKGKSSLTSVPGEDDSLSDNRVMVGDVAFYRCGNCNKHFHSRYLFVRHRRIHTGEKPFTCHVCGKQFRITVQLNRHIRDVHEGIKNYPCDICGRKFANSHARNDHRRIHTGERPCVCHLCGKAFKTKASLFVHSKFHRGFRMRQQLNSHVLLHTGEKPHICQFCSKSFRLSKTLKDHVLIHVNKGSYECAECGKHFAQERYLKNHARSHRVNRVQDIHLNPDTYTGHLFRAALLHAPLKVSHQANVKVNDVPPLLVKTEGEEEPLKELCSHCGATFSRKSELATHITKDHSVDMFHCEMCDKILKNRKSFVVHIRAHGGSLVSHWSSTAGVKSCKGQKALSHTLMLGKDLPQANFFCSVCLKRFKTEISLKKHESLHGALENVEGKKEKQRHRANPNVLYSCEKCGKRFGMKISFLKHVRHHTGEKPYTCHICGKQFTHTGGLYYHLKHVHAGIKNHACDICGRPFALKAALEDHRRIHTGERPFVCHFCGKSFKSKASLYIHNKIHSNSFPHSCTYCDKRFRWRQQLLAHLTTHTGEKNHICDVCGRGFGVKNDLTRHKHCHSEVKPHECTVCGISFGQRRYLRNHLKTRHDLPEPVALIVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-