Tpod024635.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000007.1:22350642-22366039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-06 0.0004 22.4 1.4 1 23 5 27 5 27 0.95 2 19 0.00024 0.046 16.0 3.0 1 23 33 55 33 55 0.96 3 19 0.0013 0.26 13.6 3.4 1 23 61 83 61 83 0.97 4 19 0.0066 1.3 11.4 0.5 1 23 89 111 89 111 0.94 5 19 1.2e-06 0.00023 23.2 3.0 2 23 118 139 117 139 0.97 6 19 2.2e-08 4.3e-06 28.6 0.9 1 23 145 167 145 167 0.98 7 19 7.4e-05 0.014 17.6 0.3 1 23 319 341 319 341 0.96 8 19 7.5e-05 0.014 17.5 1.0 2 23 348 370 347 370 0.94 9 19 6.8e-05 0.013 17.7 1.2 2 23 375 395 375 395 0.97 10 19 2.1e-05 0.004 19.3 0.6 1 23 401 423 401 423 0.96 11 19 4.4 8.4e+02 2.5 0.2 1 10 429 438 429 443 0.85 12 19 4.7e-05 0.0091 18.2 1.0 3 23 449 469 448 469 0.98 13 19 0.00016 0.032 16.5 0.4 1 23 475 497 475 497 0.98 14 19 0.00036 0.07 15.4 5.5 3 23 505 525 503 525 0.96 15 19 1.2e-06 0.00023 23.2 2.8 1 23 531 553 531 553 0.95 16 19 0.0026 0.5 12.7 0.6 1 23 559 581 559 581 0.95 17 19 8.4e-05 0.016 17.4 0.8 2 23 588 609 587 609 0.97 18 19 1.6e-06 0.00032 22.8 0.8 1 23 615 637 615 637 0.99 19 19 1.7e-05 0.0032 19.6 0.9 1 23 643 666 643 666 0.97
Sequence Information
- Coding Sequence
- ATGACTAAAGTATTTGTTTGCACAGAGTGTGATAAGTGCTTCAGCAACGCCTACCAGCTGAAGATCCACGCAGTAAGCCATAGTGCTGATCGCCCTTATTCGTGCGCACAGTGCGGTAAGTGCTTCAAGACATATAACAAGCTAAGCCAACATGCTGGGACCCATTCTGACTATCCCCGCCACCGCTGCGATGTTTGCGGGAAAAGTTTTAAAGCCAAAAGCATCCTAAACAGTCACAGACACGTTCACTCTAGTGACAAAGACTATTTATGTACAGAGTGTGGAAAGGCATTCAAATGGAAACGCGTCTTTGTCACCCACCTCAAAGTCCACAGCGCGGAGAAGCCCCTCAAGTGTGCGACGTGCAACAAGGCGTTCAAGAGGAAGGAACATCTCAGCAGGCACATGAACATTCACACCAAAGAGAATCCTTTTGTGTGTGAGTTCTGCGGGCGCTCGTTCTCCCAGAGCTCGAATCTGACTTCACACATACGACTCCACACCGGTGCCAAACCGTTCTCTTGTCATGTTGCGGGAAGGCATTTAGGCACCGTTTGTCACTCAAGAAACATGGGAAACATCACAAAGCATCTGAAGTTGGGGCAGGACAGGCACCCTTGGCCCAACATAAATAAGTTCGCCACTAATTTAAGGATTGACAAGCTGATTGCTGCTTTAAAAGTTTGCTCATCGACAGCATGTAATGAAATAGAAGATGATGGAAAACTATTAGACATCGCTGTTGATTTGAAAGACATTAGTCTGTCTCAAGAAACCAGAGACCTAACCATACTATCGAGCGACCATGATGGGTTATCCTCATCTGCCTCATCACAAGACTCAGGATCGGAATATATCTCCTCAGAGAATTCTGAAGACAACATGCTATTGCGTTCAAATGTCCTGGAGGACAGACCCCATGATTTGGATAGTAATGAGCAAGTTAATAGAACCTTCCGTTGCCCAAAGTGCCCAAAGGTCTGTCCCTCAGCCCAGTCATTGGTCACTCACATGGTTGCTCACACAAGGATGATAAATATTTCCTGTGACCAATGCGGGAAGGGTTTCTTCACCCACTCCCAGATGAAGGCTCATATGTTCATAGTCCACTCTGAGAAACGTGTCTGTAACATATGTGGCAAGCATTATAATAAGGATGACCTAGAGCGCCATCTTGATACCCACTTCAGAGTTTCCAAACACATATGTGACATCTGCGGTGAGTCTTTCAGGAGGAAAACTGTGCTGTTGATTCACCTTAATTCTCATGTCACGGAGAGGAAATATGATTGTGCGGTGTGCGGAAAAACCAGCCACAGCTACACGGCTCAGGAAACAGTTCTGTGTCCTCACTGCTCCAGAACATTCAAAAACCCCAGCTATTGGAGGGATCACGTGGCCACTCACAGTGGCAACAAGAACTTCACCTGTCAGGTCTGTGACAAAGGTTTCTACAGCATCGTCAAGCTGAACATCCACGCAAAGACGCACACCGCGGAAAAAGACTGCCTCTGTAGCACCTGCGGTAAGGTTTTCAAGAAGAAGTGCGAGCTCAGGAAACATGCCCAGATACATTCAGAGCGCCCACTGTTCCTGTGCAACGTGTGTGGCAAATCATTCAAGACCAATCACTACTTGAAGAGCCATCTCATGGTGCACTCTGGTGAGAAGAACTTTGTGTGCACTGTGTGCGGGAAGGCGTTCACATGGCATGTGACTCTAGTCACTCACTCCAAGGTGCACAAAGCCGAGCGACCTGTCTCGTGCACGTTGTGTAGCAAGGCGTTCAAGAGGAGGGAGGTGATGCTCAAGCACATGCGTGTCCACACAGGTGAGAAATCTTACAAGTGTCTGTTCTGCGACCGTGGCTTCACGGACAAGTGGAACCTGACTCAACACGTTCGTATACATACTGGAGACAAACCTTACAGGTGTGATGTCTGTAATCAGGCCTTCACATACAACGTGAGCCTGAAGACACATATTCAGCAACGCCACCCACATGGAGCTATAACACCTAAGTAA
- Protein Sequence
- MTKVFVCTECDKCFSNAYQLKIHAVSHSADRPYSCAQCGKCFKTYNKLSQHAGTHSDYPRHRCDVCGKSFKAKSILNSHRHVHSSDKDYLCTECGKAFKWKRVFVTHLKVHSAEKPLKCATCNKAFKRKEHLSRHMNIHTKENPFVCEFCGRSFSQSSNLTSHIRLHTGAKPFSCHVAGRHLGTVCHSRNMGNITKHLKLGQDRHPWPNINKFATNLRIDKLIAALKVCSSTACNEIEDDGKLLDIAVDLKDISLSQETRDLTILSSDHDGLSSSASSQDSGSEYISSENSEDNMLLRSNVLEDRPHDLDSNEQVNRTFRCPKCPKVCPSAQSLVTHMVAHTRMINISCDQCGKGFFTHSQMKAHMFIVHSEKRVCNICGKHYNKDDLERHLDTHFRVSKHICDICGESFRRKTVLLIHLNSHVTERKYDCAVCGKTSHSYTAQETVLCPHCSRTFKNPSYWRDHVATHSGNKNFTCQVCDKGFYSIVKLNIHAKTHTAEKDCLCSTCGKVFKKKCELRKHAQIHSERPLFLCNVCGKSFKTNHYLKSHLMVHSGEKNFVCTVCGKAFTWHVTLVTHSKVHKAERPVSCTLCSKAFKRREVMLKHMRVHTGEKSYKCLFCDRGFTDKWNLTQHVRIHTGDKPYRCDVCNQAFTYNVSLKTHIQQRHPHGAITPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -