Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000013.1:17460732-17478900[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.35 68 6.0 3.8 3 23 136 157 134 157 0.95

2 26 0.00013 0.025 16.8 1.6 1 23 162 184 162 184 0.99

3 26 0.16 32 7.0 0.9 1 23 191 213 191 213 0.98

4 26 0.0024 0.47 12.8 3.1 1 23 219 241 219 241 0.97

5 26 0.00049 0.094 15.0 1.8 1 23 247 270 247 270 0.97

6 26 3.7e-07 7.1e-05 24.8 1.6 1 23 277 299 277 299 0.98

7 26 0.00029 0.056 15.7 0.2 1 23 305 327 305 327 0.96

8 26 6e-05 0.012 17.9 0.6 1 23 333 355 333 355 0.99

9 26 2.1e-07 4e-05 25.6 1.4 1 23 361 383 361 383 0.96

10 26 4.9e-05 0.0094 18.1 0.9 1 23 414 437 414 437 0.97

11 26 8.6e-05 0.017 17.3 0.6 1 23 447 469 447 469 0.97

12 26 6e-05 0.012 17.8 0.6 1 23 475 497 475 497 0.95

13 26 3.4e-06 0.00066 21.8 1.4 2 23 504 525 503 525 0.96

14 26 1.2e-05 0.0024 20.0 3.3 1 23 531 553 531 553 0.97

15 26 0.23 44 6.6 0.3 2 23 600 620 600 620 0.90

16 26 0.023 4.5 9.7 1.5 3 23 628 648 626 648 0.90

17 26 0.0037 0.72 12.2 2.8 1 23 654 676 654 676 0.97

18 26 0.00013 0.024 16.8 2.8 1 23 682 704 682 704 0.98

19 26 0.0049 0.95 11.8 4.9 1 23 710 732 710 732 0.97

20 26 0.0005 0.096 15.0 1.3 1 23 738 760 738 760 0.98

21 26 2.4e-06 0.00046 22.3 0.8 1 23 766 788 766 788 0.98

22 26 2.8e-05 0.0055 18.9 3.7 1 23 799 821 799 821 0.98

23 26 0.00033 0.065 15.5 3.5 1 23 826 848 826 848 0.92

24 26 5.9e-05 0.011 17.9 0.1 2 23 855 876 855 876 0.97

25 26 1.4e-06 0.00026 23.0 1.4 1 23 882 904 882 904 0.97

26 26 0.00028 0.055 15.7 0.8 3 23 912 932 910 932 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.35	68	6.0	3.8	3	23	136	157	134	157	0.95
2	26	0.00013	0.025	16.8	1.6	1	23	162	184	162	184	0.99
3	26	0.16	32	7.0	0.9	1	23	191	213	191	213	0.98
4	26	0.0024	0.47	12.8	3.1	1	23	219	241	219	241	0.97
5	26	0.00049	0.094	15.0	1.8	1	23	247	270	247	270	0.97
6	26	3.7e-07	7.1e-05	24.8	1.6	1	23	277	299	277	299	0.98
7	26	0.00029	0.056	15.7	0.2	1	23	305	327	305	327	0.96
8	26	6e-05	0.012	17.9	0.6	1	23	333	355	333	355	0.99
9	26	2.1e-07	4e-05	25.6	1.4	1	23	361	383	361	383	0.96
10	26	4.9e-05	0.0094	18.1	0.9	1	23	414	437	414	437	0.97
11	26	8.6e-05	0.017	17.3	0.6	1	23	447	469	447	469	0.97
12	26	6e-05	0.012	17.8	0.6	1	23	475	497	475	497	0.95
13	26	3.4e-06	0.00066	21.8	1.4	2	23	504	525	503	525	0.96
14	26	1.2e-05	0.0024	20.0	3.3	1	23	531	553	531	553	0.97
15	26	0.23	44	6.6	0.3	2	23	600	620	600	620	0.90
16	26	0.023	4.5	9.7	1.5	3	23	628	648	626	648	0.90
17	26	0.0037	0.72	12.2	2.8	1	23	654	676	654	676	0.97
18	26	0.00013	0.024	16.8	2.8	1	23	682	704	682	704	0.98
19	26	0.0049	0.95	11.8	4.9	1	23	710	732	710	732	0.97
20	26	0.0005	0.096	15.0	1.3	1	23	738	760	738	760	0.98
21	26	2.4e-06	0.00046	22.3	0.8	1	23	766	788	766	788	0.98
22	26	2.8e-05	0.0055	18.9	3.7	1	23	799	821	799	821	0.98
23	26	0.00033	0.065	15.5	3.5	1	23	826	848	826	848	0.92
24	26	5.9e-05	0.011	17.9	0.1	2	23	855	876	855	876	0.97
25	26	1.4e-06	0.00026	23.0	1.4	1	23	882	904	882	904	0.97
26	26	0.00028	0.055	15.7	0.8	3	23	912	932	910	932	0.98

Sequence Information

Coding Sequence: ATGATGAACGCTTCTGAAGCTTCTATTGTTCGTTTTGTTGGGTTTGATCAAGAAGAGGTACCACCACACCCAGGTTACATTTCTCATCAAGTGAAAGAAGAGAAACAAAAGATCCAACCAAACAAAGATTTTGAAACAATGTGCACTGGTACTATGGATATCGAAACAATCACAATTAAGAGTGAAACCTTCCCTTTCAACGAACCGACTGACATGGACGTAAATGAAGAAGACGCCTTGAACCCGTATAGCTCTGAAGTTCCAAAGTTCCAAACATCTATTCATAATGACGAGAATATCGCCGGTGGCCCAATAGTCAATATAATAGACTGCCTCAAGGTTTCCTTCGACGAGATATCATCTCCTCAGAAGAAGAAACCTTTGCGTCCTTTGAAATCACTTGCGTGCGAATTTTGCGACAAGGTATGCCTCAACAGGAAAAGACTGAACCACCACAGAAGAATCGTTCATTCAAACTTTCGATACACTTGCGATATATGCTCCAAAGAGTACAAAAACAAAGGAACATTAGACATGCACAAAAAAACTCATAGCGGCGGCTCGGAAAATTATGTTTGTGATATGTGTAACTTCACCACTCCATGGAAAACCAGCATGACCATCCACCGCAGGAGACATCTCGGGAAAACGAGCTTTCAGTGCGATCTTTGTGATAAGGCGTATTACAAGAAATGCGAGTTAGAGCAGCATAAGTACGTTCATGACACATGTAAACCATACCAGTGCGATGTGTGTGGTGCGTCCTACATGCAAAAACATACCCTATTGCAACACACCCAATCAAAACACTCTGCCAACGCTCCACAGTTCCCTTGCCCGGATTGTGGCCGACAATACACCTTCAAATCCAAGTTGAAGTCGCACATGAAGACTCATCTAGGGTTCAGACCGTACATCTGCGACCTTTGCGGGAAATCCGTCGCGACCAGGAAGTCCCTTAGCAATCACAAGGCGATACATATGAATGAGAAGACGTTCAAATGCGACCTTTGCCCCAAGGCGTTCAACACGACCCCGGGGCTGAAACTCCACAAGCGCTCCCACACGGGCGATAAACCGTACTTGTGCAAGGAGTGCGGTAAGAGGTTCACGCAGCGCTCGACGCTCGTGGTCCACATGCGATATCATTTGGGGGAGCGCCCGTACACGTGTCATATATgGTTCTACACAAACTTCGAACTTCAAGTTCATAACAACGTCCATACCGGCACGAAACCGCACCAATGCGACGTTTGCGGTAAAGCGTTCCTGTACAAAGCCAACTTGCTGACTCACCAGAGAGTAAACCACGAAAACTTGCAGATGTTTCCCGCCTTATTCCAGTGCGAGGTTTGCAGCCGCAGTTTCCCGTACAAAAAGTCTCTCTTGTTACACTTGAACGCCCATTCGGGCGAGATCCAGTTCCTGTGCGATGTGTGCGGCAAGTCGCTGACCAACGCGCGGTCTCTGAAACTCCACCGGCGTCTCCACACGGGGGAGAAGCCGTGCGTGTGCGGTGTTTGCGGGAAGGCGTTCACCAAGAGCTACACCCTGAAGGTACACCAGCTGACTCACACGGGGCAGAAACCTCACTCTTGCGACGTCTGTAACAAATCTTTCACCCAGCGCTCGACGCTCGTGGTTCACAAGCGCTACCACACGCGGGCAGAGACCCTATATGTGCCCCATCTGGATGAAAATGATAGTAATGAGGAAACTTGCGGCAGTCCACGAGAGCTGATTAAAGGCGGCTCTTCGTTTCAGATCAGATTACAGGCTAGGAGAACAGACTTTGAAAAATGTAGAGTGTGCGGGGAACGGTTCAGTCCCGAAAAATTTATCCTACACAAAGTAATCCACACAGGTCTCAAACCTCACATCTGCATCCTATGTGAGGCCAAGTATAGTACGAAAACCAAACTCCGGATCCACATGAAGATCCATAACGGTATGAAAGAGTTCAGATGTGAAACCTGCGGTAAAGAGTGCCTGAGCAGGAAACTTCTTCGGAGGCACATGGGTAGCCACAGTGAGGACCGACCTTTCGAATGCGAAATCTGCTTTCGGAAATTCAAACGCTCTTACGAAGTCACCAAGCACAAGAAGATCCACATAGGGGAGAAGAACCACGTGTGTAATATTTGCGGCTACGCGACTATGCACAAGGCGTGTTTGGAAACCCACCAGAAACGGCATTTGGGGGAGTTTATCTTCAAGTGCTTGGTTTGCGGTAAGGGTTTCTTCTCTAGCTTTGAGTATAGAGAGCATAAGAACGTTCACACGGGTGATAAGCCTTACATGTGTGACATGTGTGGGAAGGCGTATACTTCTAAGAACAGTCTGATGGCGCACAAGAAGACTCACGAACCCGACGCCAAGCCGACGGAAAAGGTGCATCGGTGCGGCTACTGCGATAAAAGTTTCAAGTATCGGAAATCTCTTCTTGTGCACGTTAAGTCGCATTCGGGAGAGAAGTTTCTCTGCGATTTTTGTGGCAAGGCGTTCTCAACTAAAGACAGTCTTAAACTTCACTGCCGCAACCATACGGGCGAGAAGACGAACGTGTGCACGGTATGTGGGAAGGCATTCAGTGCGCTCTACACGCTCAAAGTTCACCAACTTATCCACACGGGCGAGAAGCCTCACGTTTGTGATATGTGTGGTAAGGCGTTCACCCAGAGGTCCACTCTTGTGGTTCACAAGCGCTCACACACTGGAATGCGTCCATACGGTTGTCACATCTGCGCTAAAGGTTTTGCATCTCGGACGCTTTTGAACAATCATTTGAAGATTCATGACGAAGATGTGTATTACAAACACTTAGGGGTGATCTGA
Protein Sequence: MMNASEASIVRFVGFDQEEVPPHPGYISHQVKEEKQKIQPNKDFETMCTGTMDIETITIKSETFPFNEPTDMDVNEEDALNPYSSEVPKFQTSIHNDENIAGGPIVNIIDCLKVSFDEISSPQKKKPLRPLKSLACEFCDKVCLNRKRLNHHRRIVHSNFRYTCDICSKEYKNKGTLDMHKKTHSGGSENYVCDMCNFTTPWKTSMTIHRRRHLGKTSFQCDLCDKAYYKKCELEQHKYVHDTCKPYQCDVCGASYMQKHTLLQHTQSKHSANAPQFPCPDCGRQYTFKSKLKSHMKTHLGFRPYICDLCGKSVATRKSLSNHKAIHMNEKTFKCDLCPKAFNTTPGLKLHKRSHTGDKPYLCKECGKRFTQRSTLVVHMRYHLGERPYTCHIWFYTNFELQVHNNVHTGTKPHQCDVCGKAFLYKANLLTHQRVNHENLQMFPALFQCEVCSRSFPYKKSLLLHLNAHSGEIQFLCDVCGKSLTNARSLKLHRRLHTGEKPCVCGVCGKAFTKSYTLKVHQLTHTGQKPHSCDVCNKSFTQRSTLVVHKRYHTRAETLYVPHLDENDSNEETCGSPRELIKGGSSFQIRLQARRTDFEKCRVCGERFSPEKFILHKVIHTGLKPHICILCEAKYSTKTKLRIHMKIHNGMKEFRCETCGKECLSRKLLRRHMGSHSEDRPFECEICFRKFKRSYEVTKHKKIHIGEKNHVCNICGYATMHKACLETHQKRHLGEFIFKCLVCGKGFFSSFEYREHKNVHTGDKPYMCDMCGKAYTSKNSLMAHKKTHEPDAKPTEKVHRCGYCDKSFKYRKSLLVHVKSHSGEKFLCDFCGKAFSTKDSLKLHCRNHTGEKTNVCTVCGKAFSALYTLKVHQLIHTGEKPHVCDMCGKAFTQRSTLVVHKRSHTGMRPYGCHICAKGFASRTLLNNHLKIHDEDVYYKHLGVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -