Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000013.1:17517414-17531522[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0012 0.23 13.8 3.0 2 23 106 127 105 127 0.96
2 25 0.00026 0.05 15.8 2.3 1 23 133 155 133 155 0.98
3 25 0.00017 0.032 16.5 0.5 1 23 161 183 161 183 0.98
4 25 0.00025 0.048 15.9 0.1 2 23 190 211 189 211 0.95
5 25 0.0014 0.27 13.6 0.5 1 23 217 240 217 240 0.98
6 25 5.8e-05 0.011 17.9 3.0 3 23 252 272 251 272 0.97
7 25 6.5e-05 0.013 17.7 0.1 1 23 278 300 278 300 0.95
8 25 5.7e-07 0.00011 24.2 0.4 2 23 307 328 306 328 0.97
9 25 0.00095 0.18 14.1 2.1 2 23 412 433 411 434 0.94
10 25 9e-05 0.017 17.3 0.3 1 23 441 463 441 463 0.97
11 25 3e-05 0.0058 18.8 3.8 1 23 469 491 469 491 0.98
12 25 0.0018 0.34 13.2 0.4 2 23 498 519 497 519 0.97
13 25 0.0003 0.057 15.7 0.7 1 23 525 547 525 547 0.96
14 25 0.00023 0.044 16.0 0.3 1 23 553 576 553 576 0.95
15 25 2.2e-05 0.0043 19.2 2.8 2 23 587 608 586 608 0.98
16 25 0.005 0.96 11.8 3.8 3 23 616 636 614 636 0.97
17 25 1e-05 0.0019 20.3 2.2 2 23 643 664 643 664 0.97
18 25 3.2e-07 6.1e-05 25.0 0.8 1 23 670 692 670 692 0.98
19 25 0.044 8.4 8.8 2.9 1 22 698 719 698 719 0.94
20 25 0.29 55 6.3 0.4 8 23 718 733 717 733 0.94
21 25 3.7e-05 0.0071 18.5 1.2 2 23 745 767 744 767 0.96
22 25 7.1e-06 0.0014 20.8 0.8 1 23 773 795 773 795 0.95
23 25 5.6e-06 0.0011 21.1 0.6 1 23 801 823 801 823 0.98
24 25 8.9e-08 1.7e-05 26.8 0.9 1 23 829 851 829 851 0.98
25 25 0.00014 0.026 16.7 0.6 1 21 857 877 857 878 0.95

Sequence Information

Coding Sequence
ATGAAGACCCATGCAAATGAAAGAATTACAGTTTACAAAGTTGCAGAACTTTTCAACAAGGCATACACTCATGTTGCAACACTTGCTAAAGGCATATCTGGTTTTTCGTGTACTGGGATATTTCCGATGAACCCAAATGTGTTCTCCGATGAAGATTTCCCACTAGAAATAGAATCTACAGAGGCGCTCACAGACGCACCTTCTCGGAGTTCACAGGATGTAACGCTTCAGGATCTTTCTCCCCTGCCAGTTTTGAGTCAGCCAGGACCAAGAACGAAACTTGGCTGTGAATTGAACTCTGGTAATAAGGAACTGACTTGTGACAAGTGTGGCAGAAAATGTGTTTCCAAAAAACGTCTGAAGCAACACATGGTCATCCATAGTGAGAACCGACCATTCAGCTGTGAGATATGTTTCCGGAGATTTAAACGCTCATATGAGGTGAATATGCACAGGAAGATACATGCGCAACAGAAGAAGTATACCTGTGAGATATGCGACTATGCCACAACGCAGAAGCCATACCTCAACGCCCATAACAAACGCCATTTGCGTGAATTCAAAGTAACGTGTGACATCTGCGGGAAGGGTTTCTATTCTGAATTTGATCTCAAGGAGCACGCAAATGCGCACACTGGAGATAAAAGCTTCCGGTGTGATCTTTGCGGCAAGGGGTACCTATACAAGAACAACCTGGTAGCCCACAAGAAAACGGCACACCCCGCCGTGCAGAGAGATGAGAAGGCCAACTGCTGCGATGTTTGTGGTAAAACGTTTTCTTATAAGAAGTCGATGTTGCTGCACATGAGGCTCCACACGGGAAACGGAGGTTTCCTCTGTGACGTTTGCGGCAAAGCTCTGGCCAATAACGAGTCTTTGAAGGTGCACAAACGCATGCACACAGGCGAGAAACCTGTCGTCTGCAACGTGTGCGACAAAGCGTTCACGTCCAGAAACTATCTCAGGGTCCATCTGCGGACTCATACAGGTGAACGTCCGTATGTGTGCGAACTGTTTGCGAGCAAAGGAAATAATAAGCTAAATATCTGTGATGGCGTCGCTTCGCCCTTCAAGAGGACCACTAAACCCAAAAGGAAAATTCAAAAGTACGTTACCAAGTTGTCTATCAAACGACACTTGATAAATCTGAAGCAAGAAATACCCGACTATATAGGACACGAGGTTGACGTTTTGAACGAGGGCACCACCACCGCCACGAGGTGTCATCTTTTGACGTGCCAGATATGTTTCATGCCTTTCCCGAGTCCGCACAAACTAAATGTTCACCTAAAATCTCACCATTGTAAACTCAAAGAAGACTACAGTTGTAACGTGTGTGGGAAGGAGTTTGTGTCGAAGAAGATTCTGAGGAGGCATCTGGTCGTCCACAGCAAAGACCGCCCGTACACTTGTAACATCTGCCACAAAACTTTCAAGAGGCCTTACGACATCACGATCCACAGCAAGAAGCATACTGGAGAGAATAAGCTCTACTGCGATATCTGCGAATACAGCACCATCTATCGGTCGGCGCTGGCAACCCACCGTAAGAGACACTTTGAGGAGTACAAGTTCCGCTGCGAGATCTGTGGTAAGGGCTTCTTTGTCAACACTTGGCTGCAGGAGCACAAGAACTTTCATACGGGTGAGAAGCCGTTCCAATGCGACCTGTGCGGGAAGGCATTTCCGTACACGCGGTATTTGGTCGCCCACAAGAAAGCGAACCATCCCGACGCACAGAACCCGGCCAAGCTAAACCAGTGTGACACGTGCGGTAAGACGTTTGCACACAGGAAATCTCTGACCCTACACGTCAAGTCACACACGGGTGAGAACGTGTGTCTGTGCGACATATGCGGCAAGGCGCTCACGAATAAGGAGCACCTCAAGTTTCATCGGCGCATCCATACGGGTGAGAAACCGAACGTTTGTGATGTGTGTGGTAAGGCGTTCAGCAAACGGTGCAATCTCAAACTTCATGAACGGACGCATACAGGGGAGCGCCCATATACTTGTGATATCTGTGGCAAGGCGTTCACGCAGCGCTCCACGCTCGTGATTCATAAACGCTACCACACAGGCCAAAGACCTTATTTGTGTCATTTGTGTCACAAGGGATTTGTATGCAAAGCTCTCCTAAACGCTCATCAAAAGACGTTTTCGAGCAAGCAATATCTGGTCCAACACCAAGAGAACCACGGCAACGCGCCGTGCGCACAGAGGAGGACAATCCAATGTAACACGTGTGGGAAAATATTCCGACAGAGGAACTCTTTGTCCCTGCACGTGAAAAAGTCGCACCGAGGTAACGACACATTCCTGTGCGATATCTGCGGGAAGTCCCTCACGGACAAATACTACCTCAAGCTCCACCGACGGATACACGCCGGAGAGAGACCACATGTGTGCCAAGTGTGCGGAAAAGCTTTCGGCAAGCCGGACACTCTAAAGAGCCACGAACGGACTCACACGGGGGAACGCCCGTACACTTGCGACTTGTGCGGGAAGTCCTTCTCGCAGCGTTCCACCCTCATCATACACTTGCGGTACCATATGGGGGAGACTCCGTATACGTGTCAGCGGTGTGAGAAAGGTTTTGTCAGTAGATCGCTGCTGAATGCTCATCGGAAAAGATCGTGTATATGA
Protein Sequence
MKTHANERITVYKVAELFNKAYTHVATLAKGISGFSCTGIFPMNPNVFSDEDFPLEIESTEALTDAPSRSSQDVTLQDLSPLPVLSQPGPRTKLGCELNSGNKELTCDKCGRKCVSKKRLKQHMVIHSENRPFSCEICFRRFKRSYEVNMHRKIHAQQKKYTCEICDYATTQKPYLNAHNKRHLREFKVTCDICGKGFYSEFDLKEHANAHTGDKSFRCDLCGKGYLYKNNLVAHKKTAHPAVQRDEKANCCDVCGKTFSYKKSMLLHMRLHTGNGGFLCDVCGKALANNESLKVHKRMHTGEKPVVCNVCDKAFTSRNYLRVHLRTHTGERPYVCELFASKGNNKLNICDGVASPFKRTTKPKRKIQKYVTKLSIKRHLINLKQEIPDYIGHEVDVLNEGTTTATRCHLLTCQICFMPFPSPHKLNVHLKSHHCKLKEDYSCNVCGKEFVSKKILRRHLVVHSKDRPYTCNICHKTFKRPYDITIHSKKHTGENKLYCDICEYSTIYRSALATHRKRHFEEYKFRCEICGKGFFVNTWLQEHKNFHTGEKPFQCDLCGKAFPYTRYLVAHKKANHPDAQNPAKLNQCDTCGKTFAHRKSLTLHVKSHTGENVCLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHERTHTGERPYTCDICGKAFTQRSTLVIHKRYHTGQRPYLCHLCHKGFVCKALLNAHQKTFSSKQYLVQHQENHGNAPCAQRRTIQCNTCGKIFRQRNSLSLHVKKSHRGNDTFLCDICGKSLTDKYYLKLHRRIHAGERPHVCQVCGKAFGKPDTLKSHERTHTGERPYTCDLCGKSFSQRSTLIIHLRYHMGETPYTCQRCEKGFVSRSLLNAHRKRSCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-