Tpod054858.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000013.1:17586635-17597887[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.00065 0.13 14.6 1.4 2 23 11 32 10 32 0.97
2 35 0.094 18 7.8 4.1 1 23 38 60 38 60 0.98
3 35 0.052 10 8.6 1.7 2 23 67 88 67 88 0.97
4 35 0.00052 0.1 14.9 0.1 2 23 141 162 140 162 0.97
5 35 2.3e-07 4.4e-05 25.5 0.7 1 23 168 190 168 190 0.98
6 35 3.6e-05 0.0069 18.6 4.5 1 23 196 218 196 218 0.98
7 35 5.7e-07 0.00011 24.2 1.8 1 23 224 246 224 246 0.99
8 35 9.5e-07 0.00018 23.5 0.7 2 23 292 313 291 313 0.97
9 35 0.00052 0.1 14.9 4.9 1 23 318 340 318 340 0.97
10 35 0.97 1.9e+02 4.6 5.2 1 23 346 368 346 368 0.98
11 35 0.029 5.6 9.4 1.5 2 23 375 396 374 396 0.97
12 35 0.00018 0.034 16.4 4.5 1 23 402 424 402 424 0.98
13 35 0.44 85 5.7 6.4 1 23 435 457 435 457 0.97
14 35 0.00061 0.12 14.7 0.1 1 23 463 485 463 485 0.98
15 35 1e-06 0.0002 23.4 0.3 1 23 491 513 491 513 0.98
16 35 3.3e-07 6.3e-05 25.0 0.5 1 23 519 541 519 541 0.98
17 35 0.00026 0.05 15.8 4.5 2 20 594 612 593 615 0.94
18 35 0.0091 1.8 11.0 3.6 1 23 621 643 621 643 0.98
19 35 0.044 8.5 8.8 3.5 1 23 649 671 649 671 0.99
20 35 0.0007 0.14 14.5 0.8 2 23 678 699 677 699 0.96
21 35 0.00036 0.07 15.4 1.4 1 23 705 727 705 727 0.96
22 35 0.13 25 7.4 6.6 1 23 738 760 738 760 0.96
23 35 0.00027 0.052 15.8 0.0 1 23 766 788 766 788 0.98
24 35 1.4e-05 0.0026 19.9 0.1 1 23 794 816 794 816 0.97
25 35 9.5e-07 0.00018 23.5 2.3 3 23 824 844 822 844 0.97
26 35 1.3e-06 0.00025 23.1 1.1 2 23 896 917 895 917 0.96
27 35 8.1e-05 0.016 17.4 3.3 1 23 923 945 923 945 0.95
28 35 0.00026 0.051 15.8 3.7 1 23 951 973 951 973 0.98
29 35 0.44 86 5.7 7.7 1 23 979 1001 979 1001 0.96
30 35 0.00025 0.048 15.9 1.4 1 23 1007 1029 1007 1029 0.97
31 35 8e-05 0.016 17.4 4.1 1 23 1040 1062 1040 1062 0.98
32 35 0.0021 0.4 13.0 0.3 1 23 1068 1090 1068 1090 0.96
33 35 7.8e-07 0.00015 23.8 0.1 1 23 1096 1118 1096 1118 0.99
34 35 1.2e-06 0.00023 23.2 3.1 3 23 1126 1146 1125 1146 0.99
35 35 3.4e-06 0.00065 21.8 1.6 1 23 1152 1174 1152 1174 0.99

Sequence Information

Coding Sequence
ATGGCAAAGCACAACCCGGTCAACCAGATTAAATGTGACGTGTGTGACAAAACATGTCCATCTGGGTTTCAGCTGAAGCAACACTTAAAAATTCATGAGACGGTGAAGCTATACTCGTGCGATATGTGTTCGTATTCGAGCCACGTACAGGTGAACCTTCACGCTCATAGAAAGAGGCACTTCAACGATTACAAGGCGAGGTGCGACGTGTGTAACAGAGGTTTCTACTCCATGTGTTCGTACAAGTTACACCAGGCCGTCCATAAAGACGAGATGCCCTTCAGTTGCGACGTCTGCGACGCACAAACCAGACTACGAGGAAACCGTCTTAAAGTTCAAGTGCCGGTATTGCGGCAAGGGTTTTCGCTACCGGGGAAGTGCGAGGTCCACGAGAAGCGGCACCTGGGCCACAAAGAAGTGATGTGCGACATATGCGGCAAAGCGCTGAGCACGGTCCGCGAGCTGGGCCTCCACATGCGCCGTCATACCGGGGAGAAGCCATACGTCTGCAGCTATTGCGGGAAGACGTTCAGCCGCCTGAACTCGTTGACTCTCCACGTGCGTGTCCATACGGGCGAGCGACCGTACACCTGCGGCGAGTGCGGGAAGTCGTTCACGCAGCACTCGAGCTACGCTATCCACAAGCGCCACCATACCGGGGAGAGACCATATCGTTGTCTGATCTGTGAGAAAACCTTTGTGTCGAAGTCTCTGTTGAAGTACCACATGAGGTCTCACGAAGAACACAAGTCCCCAAGTAGTTTCTTTGTTGAACAATCTGAGGCAAAATCTAAACGCTCCAAGGTTAAGAAGAAAGCTTCAAACTCCGTTTCTGGTCCTGTTAAGAGGAAGGTATCTAACAAAAAGTCAATCAAATGTAAAATTTGCGGAAAAGAGTACAAGCGAAACAGCACCCTGCAGAATCACTTGCTCGTCCACGGTAAGGATTCCCACGAGTGCGACCTTTGTAACAAACCGTTCAAGTCCGAGTGGCAtctaaaacaacacaaaaaataCCACAGCAAAGCAAGACAGTACAAATGTGACATGTGTGGATACGAGACGTGCATTAAGGGTAACCTCCTCTGTCACAAAAGGAAACACTTAAAACATTACATTGTCAAGTGTGATGCGTGTAATAAAGGCTTCTATAGGACATGTGATTACCAAgaacatgttaaaatacacaCAGGCGAGAAACCTCACAGATGCAACGAGTGCGGAAAGTCGTTCCCCGGCAAACACCGATTGGCCAATCACAAGAAAACTCACGAACCGGACTACGAAGAGACAGTTCTTCGGTTCAGGTGCAAGTTTTGTAACAAAGGTTTCCCCGGTCAGAGTCTGTGCACGAGGCATGAGAAACACCACCTTGGTGTCAAGGAGTTCATCTGCGACGTTTGCGGCAAAGCCCTTAGCTCGGCGCATGCTATGAGTCTCCACCTTCGCATCCACACTGGGGAAAAACCATTTGTGTGCGACTTCTGCGGTAAGATGTTTGGTCGGTCGTCTGCTCTCACTATGCACTTACGTGTTCACACGGGTGAGCGTCCTTATGTGTGCAACGTGTGTGGGAAGGGGTTCACCCAGCCGTCGACTCTCACGATTCACAAGCGTTACCACACGGGCCAGAAACCGTTCACAAGTGATAACATTGTTGCTAAATCACCAGAGAAATCTAAACGCCATAACAAGAACTCTCTGATTTCGCCAAAGTCGCTATCTAGTCCTATAGAACTTATGGAATTGGAGTGGGGGAGCGCAGAGAACCCCAAATggaaatgtaaaatatgtgaGAAAGTGTTCAAACACAAATGTTCGCTGAAGAACCACATGCCGCTTCATAACACCGAGGGATCTTTCGAATGCGACATCTGCCATAAGCTTCTCAAATCAGATTATCAGTTGACTCGACATAAAAAGAACCACAGCCAATCGAAAGACTACAAATGCGGCATCTGCAGCTACGAGACGTGTTCCAACAGTAAAATCGAGAGTCATAAGAGGAGACATCTGAATGAGTACAAAGTGAAGTGTGAGCTGTGTAATAAAGGTTTCTACACCTCACGAGAGTTCCAGGAGCACACCATGCTCCACACTGGAGAAAGGCCCCACTCCTGTGAGGTCTGCGGTAAGTCCTACCCCAACAAATACCGGCTGGCGGACCACAAGAAGCTGCATGAGCCGAACTACGAGGAGATGTTCCTCAGGTTCAAGTGCCGGTTCTGCGACAAGGGCTTCCCCCGGCAAAGCTCTTGCGTCCGTCACGAGAAGCATCACCTCGGCGTCCGGGAATACGCCTGCGATGTGTGCGGCAAGGCGCTCAGTTCGGGGCCTCTCTTAAAGCTCCACATGCGCATCCACACGGGGGAGAAACCGTTTGCCTGCGACGTGTGCGGTAAATCGTTTGGGCGCGTGTATGCCCTGACCATGCACTACCGCGTCCATACCGGTGAGCGCCCGTACGGTTGCTCTGAGTGCGGGAAGAGGTTCACACAGCACTCGAGTCTAACAATACACATGCGCTATCATACGGGGCAGAAGCCGTACGTGTGTAGCACGTGCACGAGATACACAAGTGATAAGAATCGGTTTGTAGTAGTGAAATCGGAAGATAAATCAACTCGCCCCCAGAACACAGAGAAAACAGATCCCCTGGAAGTAAACAAATTGCAGAATGAGATAAAGTGTGAAATATGCGGCAAGATATACAAACGCCGCAGCACGCTACAGAAGCACATGTTCCTTCACGACGGTGCTCATTCCCACGACTGTGTCGTGTGTCAGAAGTCGTTTAGGTCCGAGTGGCACTTGAAACAGCACATGAAGGCTCACACCAGAGAAAAGAACTTCAAATGTGATATCTGCGGGTTTCGGTTCGGTCACAACTACACACTAGTAAACCATAAAAAGAGACATTCGAACAGTTACAGGCACAACTGCAACCTTTGCGGTCACGGATTCCACAGCAACCACGAGTTCTTAGTACATAAGAAGGTTCACACCGGCGAGAGGTCGTATTGTTGCGAGGTTTGCGGCAAGTCCTATCCCAACAAGTACAGGCTTGTCGACCACAAAATGATTCATCGACCCGACTACGAGGAGACGTTTCTTCGGTACAAATGTAAGCTTTGCGGTAAAGGTTTCCGTCAACAGAGTCATCGCGCGACCCACGAGAAGCGTCACCTCGGGCAGAAGGACCACATGTGCGACATTTGCGGCCGAGCCGTCAACTCCCCGACCGAGTTAAAGTTCCACATGCGCGGTCACACTGGCGAGAAGCCTTACGTTTGCCCCTACTGCGATAAGGCGTTTATCCGGCTGATGGCTCTCAAGATACATCTCCGCGTCCATACGGGAGAGCGCCCGCACGGCTGTGACCACTGTGACAAGAGGTTCACACAGCGCTCAAGTCTCACCATACACATGCGATACCACACTGGGGTCAAACCGTACAAGTGCGACACATGTTCAAAAACGTTTGTATCGAGAACATTGCTGATAACACACATTAAAACTCacccttag
Protein Sequence
MAKHNPVNQIKCDVCDKTCPSGFQLKQHLKIHETVKLYSCDMCSYSSHVQVNLHAHRKRHFNDYKARCDVCNRGFYSMCSYKLHQAVHKDEMPFSCDVCDAQTRLRGNRLKVQVPVLRQGFSLPGKCEVHEKRHLGHKEVMCDICGKALSTVRELGLHMRRHTGEKPYVCSYCGKTFSRLNSLTLHVRVHTGERPYTCGECGKSFTQHSSYAIHKRHHTGERPYRCLICEKTFVSKSLLKYHMRSHEEHKSPSSFFVEQSEAKSKRSKVKKKASNSVSGPVKRKVSNKKSIKCKICGKEYKRNSTLQNHLLVHGKDSHECDLCNKPFKSEWHLKQHKKYHSKARQYKCDMCGYETCIKGNLLCHKRKHLKHYIVKCDACNKGFYRTCDYQEHVKIHTGEKPHRCNECGKSFPGKHRLANHKKTHEPDYEETVLRFRCKFCNKGFPGQSLCTRHEKHHLGVKEFICDVCGKALSSAHAMSLHLRIHTGEKPFVCDFCGKMFGRSSALTMHLRVHTGERPYVCNVCGKGFTQPSTLTIHKRYHTGQKPFTSDNIVAKSPEKSKRHNKNSLISPKSLSSPIELMELEWGSAENPKWKCKICEKVFKHKCSLKNHMPLHNTEGSFECDICHKLLKSDYQLTRHKKNHSQSKDYKCGICSYETCSNSKIESHKRRHLNEYKVKCELCNKGFYTSREFQEHTMLHTGERPHSCEVCGKSYPNKYRLADHKKLHEPNYEEMFLRFKCRFCDKGFPRQSSCVRHEKHHLGVREYACDVCGKALSSGPLLKLHMRIHTGEKPFACDVCGKSFGRVYALTMHYRVHTGERPYGCSECGKRFTQHSSLTIHMRYHTGQKPYVCSTCTRYTSDKNRFVVVKSEDKSTRPQNTEKTDPLEVNKLQNEIKCEICGKIYKRRSTLQKHMFLHDGAHSHDCVVCQKSFRSEWHLKQHMKAHTREKNFKCDICGFRFGHNYTLVNHKKRHSNSYRHNCNLCGHGFHSNHEFLVHKKVHTGERSYCCEVCGKSYPNKYRLVDHKMIHRPDYEETFLRYKCKLCGKGFRQQSHRATHEKRHLGQKDHMCDICGRAVNSPTELKFHMRGHTGEKPYVCPYCDKAFIRLMALKIHLRVHTGERPHGCDHCDKRFTQRSSLTIHMRYHTGVKPYKCDTCSKTFVSRTLLITHIKTHP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-