Tpod054855.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:17569453-17580736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0015 0.29 13.4 2.0 1 23 42 64 42 64 0.98 2 34 1.3e-05 0.0026 19.9 4.1 1 23 70 92 70 92 0.97 3 34 6.8 1.3e+03 1.9 6.0 1 23 98 120 98 120 0.98 4 34 0.00064 0.12 14.6 1.7 1 23 126 148 126 148 0.96 5 34 5.6e-06 0.0011 21.1 0.7 1 23 154 176 154 176 0.99 6 34 4.1e-08 7.9e-06 27.8 1.6 1 23 186 208 186 208 0.97 7 34 4.1e-05 0.0079 18.4 0.2 2 23 215 236 214 236 0.97 8 34 2.1e-06 0.00041 22.4 0.9 1 23 242 264 242 264 0.97 9 34 3.1e-06 0.0006 21.9 4.3 1 23 270 292 270 292 0.97 10 34 5e-05 0.0096 18.1 2.1 1 23 358 380 358 380 0.98 11 34 7.8e-07 0.00015 23.8 2.9 1 23 386 408 386 408 0.98 12 34 0.00093 0.18 14.1 2.5 1 23 414 436 414 436 0.98 13 34 0.001 0.2 13.9 0.2 2 23 443 464 442 464 0.96 14 34 0.013 2.5 10.5 3.6 1 23 472 494 472 494 0.98 15 34 0.0017 0.33 13.3 6.3 1 23 504 526 504 526 0.97 16 34 0.0039 0.75 12.1 0.3 2 23 533 554 532 554 0.97 17 34 4.9e-05 0.0094 18.1 0.3 1 23 560 582 560 582 0.98 18 34 5.5e-05 0.011 18.0 0.6 1 21 588 608 588 609 0.96 19 34 0.0002 0.038 16.2 3.2 1 23 688 710 688 710 0.99 20 34 0.00011 0.022 17.0 2.3 1 23 716 739 716 739 0.97 21 34 0.59 1.1e+02 5.3 5.1 2 21 746 765 745 767 0.91 22 34 2.5e-05 0.0049 19.0 0.8 1 23 773 796 773 796 0.98 23 34 5.7e-05 0.011 17.9 1.8 1 23 801 823 801 823 0.99 24 34 0.0091 1.8 11.0 1.9 1 23 833 855 833 855 0.97 25 34 0.00091 0.18 14.1 1.3 1 23 861 883 861 883 0.98 26 34 1.1e-06 0.00021 23.3 0.7 2 23 890 911 889 911 0.97 27 34 6.6e-05 0.013 17.7 4.7 1 23 917 939 917 939 0.98 28 34 0.051 9.9 8.6 1.3 2 23 961 983 960 983 0.95 29 34 0.0013 0.26 13.6 4.2 1 21 988 1008 988 1010 0.94 30 34 0.00027 0.051 15.8 2.7 1 23 1020 1042 1020 1042 0.98 31 34 2.8e-06 0.00054 22.0 0.7 1 23 1048 1070 1048 1070 0.98 32 34 3.2e-05 0.0061 18.7 0.3 1 23 1076 1098 1076 1098 0.99 33 34 9.4e-06 0.0018 20.4 1.4 1 23 1104 1126 1104 1126 0.98 34 34 0.00021 0.041 16.1 0.5 1 22 1132 1153 1132 1153 0.96
Sequence Information
- Coding Sequence
- ATGCTCGAATCTCTTCTTTACAGGTTCACAAACACAgagaacaatattaatttatcaaaaatgattCAAAGACCACTGGAGAGAAAAAGTACGAAGAAAAGAAAATGGGATTTCACTGGCCCTCATAAATGTTCTGTTTGCGATAAAGGGTTTCTTTACAACTCCATGTTGAGGAGCCATCTCTTGAGCCACATGGAAACTAGACCCTACTCGTGCCATGTCTGCGGGAAGAAGTTCAAACGCAAATACGAGGTACGGAAACACGCAAAGTTGCACGCGTTCGAGCGGGATTACGTATGCGACCTGTGCAACTATTCGACCAACTGCAAGCATAACTTTGGCATCCACCGCAAGAGACATTTTAAGCAATGTGAGTTCCGATGTGACGTTTGTCAAAAGGGTTGCTATTCTAAAGGAGAGCTGCAGAAACACACTGTTGTTCATGTGGAAGGTAAACCATACTCATGTGAAGTTTGTGGACTGTCCTACTCGTACAAGAACAATTTATCTTTACACATAAGGAAACACGAGTCATCCTATAACCCTAGTAAAGACTACCAGTGCGAAATCTGCGGAAAAACGTTCACCAACCGCAGCAACCTGACGAGCCACGTCAAATTTCATCTCGGCAAGAACAAGGTGGTGTGCGACACGTGCGGCAAGAGCCTGTCGAGTGGAGAGAGCCTTAAGACACACATGCGCATCCATACGGGGGAGAAACCGTTCCCATGCAGCACGTGCGGTAAGGCGTTCAAGGACAAGGGTTACTTGAGGACTCACAGACTGTCTCATACGGGGGAAAAGCCGCACACCTGCGATCAGTGCGGGAAGTCCTTCACTCAGCGCTCGACACTCACTATTCACAAACGCTATCATTCTGGAGAGCGACCGTTGTCACATTCTTACACGAGTATCAACAAAAGAAACACGAAGGCTGTCAAACAAGAGAaacagaaaaagaaaattaaaaaatatgggatACTGGCGAAAATTCTGCAACTGAAAGACGAGCACACAACAGCAAATTCCTTTTACGACTCCAGCTCTAAATACGTCTTTCCAACCGACGGTTTCCGCTGTGACATTTGTGAGAAATGCTATGCAAGAGAGGGGCAACTAAACAAGCACAAGGTCACACACAGCGAGTTCCGCCCTTTCCACTGCTCCATTTGCCCCAAAACATTCAAACGCAAGTATGAACTCAACACGCACATACAGATCCACAACAAGGAAGGCAGGTATTCGTGTGATGTGTGCAAGTACTCGACGATGAAGAAATCTAATCTGACTCTTCACAGACAACGACACTTCAATCAGTATAATATCAAGTGCGAGGTTTGCGGGAAAGGTTACTACACTAATTATGAAATGAAGCTCCATAAAGCTGTCCACATTCACGGAGAAACAAAACCGTATGTTTGTGACGTGTGTGATAAACAATTCTACTGCGAGTACAACCTAAATCTGCACAAGAAAAGACACAGCTCCGACCAGCAATCAAAGGAGAAATTCACATGCGAGCACTGTGGGAAAAAGTTGCATTCGCGCTCCGAACTAACGAGGCATTCCAAATATCACTCGGGTAACTTTCAGGTGGTGTGCGACATCTGCGGCAAGTGCCTCTCCGGGACAAACGTGCTGCAAGTCCACCGCAGGATTCACACAGGCGAGAAGCCTTTTGTTTGCGATACTTGCGGGAAAGCGTTCAGTGCCTTGAGCTACCTCGTGCTCCACAAACGCTCGCACACGGGAGAGAAGCCGTTCCCTTGCGGGAATTGTGGGAAATGTTTCGCCCAGCGTTCAAGCCGCACCATTCACATGAGggCGGCAACTATATTGAATACTACCCCTGAAGGAGTTACAGGGGGTGGCAACATTTGGTGGGTGATTATGCCCAACTCACAGGTCCACAACCATGAACACACAGAAGTTTCCTCAGTAAAAAATGAAAAGAGTGAATTTGTTCTAGACAATCACACATACTTGTCTGAACGAAAACGCCCAGCCCATAATATTTCTCATGAAAAATCTAGAACTAAAAAACTACTCCATTCGGGTGAATTCAAGTGCCCGATATGCGGGAAAGTTTGTGAAGCGAAACATCGCTTAAAGTATCACATAATGACCCACGACGAGTCTCGTCCATACAAATGTGATGTGTGTGACAAACCTTTCAAAAACATGTGGCACGTGAAGAAACACAAGAATATAACTCACTTGGGAGTAAAAAACTGTGTATGCAAAGTTTGCGGCTATGCCTCATTTTATCGATCGCAGTTAAAGCAACACGAAAAATGTCACGGTGGTACATTCAAGTACAAATGCGAACTTTGTGAGAAATCTTTCCCGGATAAGACGGGGTTCCAAGCACATCGAATAACTTTCCACGGCGAAGAGCCTTATAAATGTGCCGAATGCGGCAAAACGTACTCCAAGAAACGGACTTTGGACGATCATACAAAGTCCCACATTCCTGGTTATAAGCCTGTCATGAAGCATCAGTGTGAACTCTGTGGGAAGACATTTCTAAGAATTAACGAACTCTATGTCCACAACCGGCGGCACAGTGTGGATAAAACTCACACCTGTCTATTGTGTGAGAAACGGCTGGCGTCACCCCAGTCATTGAAGTACCACATGCGGATCCATACAGGAGAGAAGCCACTAGTTTGTGATACGTGCGGGAAATCTTTCAGAACCTCGCAACTTCTCAGGGTTCACCGGAGGGTACACACCGGGGAAAAGCCGTATTCTTGCGACCTCTGTTCCAAGTCCTTCTCGCAGTGCTCCACTTTGACCGTCCATAAACGTTACCACACAGGGCAGAGACCTTATATATTCAAACTCCACGAACGGATACATACCAGAGAGTTTAACATCAAGTGTGACAAGTGTGGGAAAGGATTCCCTTGCCTCTTGACTCTTAGGTCACACTTGATTACCTTTCACGGTGCGGAGCCATTTACCTGCACCACCTGCGGTAAAACTTACACCAAAGACTCCAGTTTACGGGCGCACACAAAGTGTCATTCACCGGGTTACACCCACGAGAAGAAGTTTCAGTGCGACTGCTGCGGCAAAACTTTCCGGACCAAGATGCAGTTGGTGGTTCACGGGAGGAGCCACACCGGGGAAAGGAACTTTCCTTGCGAAAAGTGCGGGAAAGCCTTCTCGTCCAAACACATGTTGGTAGGGCACTTGCGGATACACACGGGGGACAGGCCCTATGTGTGTGAAACGTGCGGGAAAGGTTTCCGAACGTTGGACATTTTGAGACTTCACCTCAGGACCCATACGGGCGAGAAGCCATTCTCGTGTGACATTTGTTCCAAGTCTTTTTCCCAACGCTCGGCAATGAACGTTCACAAGCGCAACCATGGTGGGCAAAAACCTTTTGAATGTGTTCTTTGTACACGTTCTTTTGCTACTAAAACACTGCTCACCAATCACCTGAAAACCAAGAAATGCGTACCAGTGCTTGTTAGTAAGAAATGA
- Protein Sequence
- MLESLLYRFTNTENNINLSKMIQRPLERKSTKKRKWDFTGPHKCSVCDKGFLYNSMLRSHLLSHMETRPYSCHVCGKKFKRKYEVRKHAKLHAFERDYVCDLCNYSTNCKHNFGIHRKRHFKQCEFRCDVCQKGCYSKGELQKHTVVHVEGKPYSCEVCGLSYSYKNNLSLHIRKHESSYNPSKDYQCEICGKTFTNRSNLTSHVKFHLGKNKVVCDTCGKSLSSGESLKTHMRIHTGEKPFPCSTCGKAFKDKGYLRTHRLSHTGEKPHTCDQCGKSFTQRSTLTIHKRYHSGERPLSHSYTSINKRNTKAVKQEKQKKKIKKYGILAKILQLKDEHTTANSFYDSSSKYVFPTDGFRCDICEKCYAREGQLNKHKVTHSEFRPFHCSICPKTFKRKYELNTHIQIHNKEGRYSCDVCKYSTMKKSNLTLHRQRHFNQYNIKCEVCGKGYYTNYEMKLHKAVHIHGETKPYVCDVCDKQFYCEYNLNLHKKRHSSDQQSKEKFTCEHCGKKLHSRSELTRHSKYHSGNFQVVCDICGKCLSGTNVLQVHRRIHTGEKPFVCDTCGKAFSALSYLVLHKRSHTGEKPFPCGNCGKCFAQRSSRTIHMRAATILNTTPEGVTGGGNIWWVIMPNSQVHNHEHTEVSSVKNEKSEFVLDNHTYLSERKRPAHNISHEKSRTKKLLHSGEFKCPICGKVCEAKHRLKYHIMTHDESRPYKCDVCDKPFKNMWHVKKHKNITHLGVKNCVCKVCGYASFYRSQLKQHEKCHGGTFKYKCELCEKSFPDKTGFQAHRITFHGEEPYKCAECGKTYSKKRTLDDHTKSHIPGYKPVMKHQCELCGKTFLRINELYVHNRRHSVDKTHTCLLCEKRLASPQSLKYHMRIHTGEKPLVCDTCGKSFRTSQLLRVHRRVHTGEKPYSCDLCSKSFSQCSTLTVHKRYHTGQRPYIFKLHERIHTREFNIKCDKCGKGFPCLLTLRSHLITFHGAEPFTCTTCGKTYTKDSSLRAHTKCHSPGYTHEKKFQCDCCGKTFRTKMQLVVHGRSHTGERNFPCEKCGKAFSSKHMLVGHLRIHTGDRPYVCETCGKGFRTLDILRLHLRTHTGEKPFSCDICSKSFSQRSAMNVHKRNHGGQKPFECVLCTRSFATKTLLTNHLKTKKCVPVLVSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -