Tpod054838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000013.1:17404658-17437561[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.013 2.5 10.5 0.4 2 20 102 120 101 123 0.92
2 41 0.00026 0.051 15.8 2.6 3 23 131 151 131 151 0.99
3 41 0.00017 0.033 16.4 3.4 1 23 157 179 157 179 0.98
4 41 0.00013 0.026 16.8 6.3 2 23 186 207 183 207 0.94
5 41 0.029 5.6 9.4 2.7 1 23 213 235 213 235 0.97
6 41 0.45 87 5.7 1.8 1 23 245 264 245 264 0.92
7 41 0.0072 1.4 11.3 1.3 1 23 270 292 270 292 0.95
8 41 0.0003 0.058 15.6 4.0 2 23 299 320 299 320 0.97
9 41 9.6e-07 0.00019 23.5 1.4 1 23 326 348 326 348 0.97
10 41 0.048 9.2 8.7 0.2 1 21 381 401 381 402 0.83
11 41 0.00092 0.18 14.1 0.2 2 20 455 473 454 476 0.92
12 41 0.0017 0.33 13.3 4.7 3 23 484 504 484 504 0.99
13 41 7e-05 0.014 17.6 2.9 1 23 510 532 510 532 0.98
14 41 0.079 15 8.0 7.2 2 23 539 560 538 560 0.95
15 41 0.027 5.2 9.5 0.4 1 23 566 588 566 588 0.96
16 41 3.5 6.8e+02 2.8 0.6 1 12 598 609 598 618 0.71
17 41 4.3e-05 0.0083 18.3 1.2 1 23 623 645 623 645 0.95
18 41 1.1e-06 0.00021 23.3 0.5 2 23 652 673 652 673 0.97
19 41 1.6e-07 3e-05 26.0 2.3 1 23 679 701 679 701 0.98
20 41 0.032 6.2 9.3 1.2 1 13 707 719 707 720 0.93
21 41 0.0077 1.5 11.2 2.9 1 23 768 790 768 790 0.98
22 41 0.00078 0.15 14.3 0.1 2 19 797 814 796 815 0.94
23 41 0.022 4.3 9.8 0.9 2 23 825 846 824 846 0.93
24 41 2e-07 3.8e-05 25.7 2.4 1 23 852 874 852 874 0.98
25 41 0.0001 0.02 17.1 0.4 2 23 909 930 908 930 0.96
26 41 1.2 2.3e+02 4.3 0.1 2 13 941 952 940 957 0.81
27 41 0.0075 1.4 11.3 0.3 1 23 965 987 965 987 0.95
28 41 1.2e-06 0.00023 23.2 0.6 2 23 994 1015 994 1015 0.97
29 41 1.6e-07 3e-05 26.0 2.3 1 23 1021 1043 1021 1043 0.98
30 41 1.1 2.2e+02 4.4 0.9 9 23 1053 1067 1052 1067 0.94
31 41 6.5e-07 0.00012 24.0 0.4 2 23 1074 1095 1074 1095 0.97
32 41 1.2e-05 0.0022 20.1 1.3 2 23 1108 1129 1107 1129 0.96
33 41 2.5e-05 0.0048 19.0 0.6 2 23 1136 1157 1135 1157 0.96
34 41 5.3e-05 0.01 18.0 2.7 1 23 1163 1185 1163 1185 0.98
35 41 0.29 55 6.3 6.3 2 23 1192 1213 1189 1213 0.93
36 41 0.0009 0.17 14.1 2.5 1 23 1219 1241 1219 1241 0.98
37 41 0.61 1.2e+02 5.2 0.6 1 12 1251 1262 1251 1271 0.69
38 41 0.016 3.1 10.2 3.9 1 23 1276 1298 1276 1298 0.95
39 41 6.6e-06 0.0013 20.9 0.5 3 23 1306 1326 1305 1326 0.98
40 41 1e-06 0.0002 23.4 1.6 3 23 1334 1354 1332 1354 0.97
41 41 0.00044 0.084 15.1 1.0 1 23 1360 1382 1360 1382 0.97

Sequence Information

Coding Sequence
ATGGTGCTGAGAAGAACATACCTTGCGAAACATGTGGCAGCAAATTCAGAACAACGTTTGATCTTCGGTGTCACAAAAGATTGCATACAGGGGAGGGAGTTTTCACCTGTGACAAGTGCAATAAGACATTTGTCCACAAAATTCATACCGGAGAGAAACCGGAAGTTGCAGCGTTTGTGGCAAGATGTACACCCGGATGATGACCCTGAGCGTTCACATGCGCACGCACACAGGAGAGAAACTTTACAGTTTTCTTTGGAGAGACAAGTTCACACGTTGTCTCACAAAGACCAAAACGAATGGGTCTGCCCCACTTGCAAAAGGAAGTTCGCAATAAAGAAATACTTGCTGCGCCACTTGCCGAGCCACGTGCTCGGGAGGAACCTGGGCTGCGAGACGTGCGGCCGCAAATTTAGAAAACAGTTTGAGCTGCGGTCGCATAAAAGGATTCACACTGGAGAAGGCGTGTACACTTGCGTCAAGTGTGGGAAAAAGTTTGTCCACAAAAGCATTTTGAACAACCACTTGAGATATCACGCCAAGGAATATTCATGCACTTGCAACATCTGCGGTAAAGGCTTCCACCATAAAAGCCAACTCGATGAGCACATGAATAAACACACGGGGGAACGAACGTTCTCCTGCGATATTTGTGGAAAGTGCTACTTGATCAAGAGCAGTCTTTCTTACCACAAGAAAGTTCACACCGGAGAGAACAAAAACACAGTAAAACACGAGTGCGTTGTTTGCGGCAAGTTCTACGTGAACCTGACTATACATCTGAAACGACACACGGGGGAACGTAACTTCCTGTGCGATCTGTGCGGGAAGAAGTTCCTTGATAAGAAGAGTGTGCAACTGCACCGAAGGATGCACACCGGAGAGAAACCGGAGGTGTGCCACATTTGTGGTAAAGCTTTTGCCCGGATGACGACACTGCGCTGCCATATGCGCACCCATACTGGAGAGAAACTCTACGCATGCACCGAGTGTGACAAGAAGTTTACTCAGAGAAGCGCGCTCACTATACATCGACGCTACCATACAGGGGAGAGACCATACCCTTGTAACGCCTGTGAGAAGAAGTTTTTCTACGTGAACCTGACTATATATCTGAAACGCCACACGAGGGAACGTAACTTCCTGTGTGATCTGTGCGGGAAGAAGTTCAGAGATAATATGAGTATGCCACTGCACCAGAGAGAAACCGGAGGTGTGCCACCTTTGCAGGAAAACTTTTGCCTGGAAGATGACTCTGCGCTGCCATATGTGCACCCATACAGGAAAGAAAAACTATGTGTGCATCGAGTTTCTAAAGAAAGACACGTCCACACATTGTCTCACAAGGAGACAAATGGTTGGGTCTGCCCCACTTGCAAAAGGAACTTCGTAACAAAGGCGTACTTGCTGCGCCACTTGCCGAGCCATGTGCTCGAGAGGAACCTGGGCTGCGAGACGTGTGGTCGcaaatttagaaaacattttgagCTGCGATCTCATAGAAGGATTCACACTGGAGAAGGCGTGTACAAATGTGTCCAATGTGGTAAATCGTTTGTCCATAAGAGTATTCTGAATAGCCACTTGAGGTATCACGCCAAGGAATACTCGTGTTTTTGCAAAATTTGCGGCAAGGGCTATCACCATAAAAGTCAACTCGACGAGCATTCGAATAAACACACGGGAGAACGGTCCTTCCCGTGCGATGTCTGCGGTAAGAGCTACTTACTCAAAAGAAGCCTGGCTTACCACAAGAAAGTTCACACAGGAGAGAACAAAAACACGGTAAAACACGAGTGTGGAATCTGCGGCAAGTTATACGTCAACATTTCAAAACACTTGTACCGCCACACGGGGGAACGTAACTTTCTCTGCGACTTTTGCGGCAAGAAGTTCAACAATAAAGAATCGTTGCTACTTCACGGAAGGACCCACACTGGGGAGAAACCGGAAGTCTGCAACGTTTGCGGCAAGATGTTCGCCCGGATGACGACTCTGCGTGTTCACATGCGCACACACACGGGAGAGAGACTTTACAGCTGTAATGATTGTGGCAAGAGGTTTACTCAGAGCAGTACACTCACCATACATAGACGCTACCATACCGGGGAGAGACCATACCGATGTGAGGTCTGCGGGAAAGAGTTTACCAGACGATTTGTAATATACAGAGTTCTTGCTATTGGTGCAGGCAATGAAACTCAACcagattttttaaagaaagcaCAGAACAAAAGAGAAACAACAATTGCAGCTCTAAATCGAAAGATTGAGGTAAAGAGTAGTAAAAAcacaaagaaatttaaatgcaaattttgCGACAAAGAATTTGGGAAATCGACTGAACGAAAAGATCACACGTTAACTCACAAAGACAATAACAACTGGGTCTGTCCGGTTTGCCTCAAAAGATTTGCAACCAAGAGGAACTTGCTACGCCACGTCCCGTGCTACGGCGCCGAAAAGAACTTGTCGTGTGAGGTGTGCGGTCGCAAGTTTAGAGCGCCCTCGGCGCTTGAATGTCATAAAAAGTTGCACACGGGAGATGATGTGTTCACATGCGACAAGTGTGACAGAGTTTTTAACAGAAAGAGCTCGTTGAGGAAGCACTTGAAAGTTCATTCCAAGGAATATTCGTGTTTCTGTGAGTTTTGCGACAAAGGTTTCTACTGTAAGAACCAGCTTTcgtatcataaaaataaacacacaggCAAGCGGCCTCTAGTGTGTAACATTTGCGACAAGGCCTATATGGTCAGGAGTAGTCTGCACGCCCACATGAGCATGCATAGAGGAGAGAAACAGAAGAGGAAAAAACAAGAGTGCGAAGTTTGTGGCAAGTTTTATGCGAATTTGTCGGTTCATTTGAAATGTCACACGGGGGAACGTAACTTTTTATGTAATTTGTGTGGTACGAAATTTTATGAGAAACAAGCGCTGCTGCTTCATGGACGAATCCACACCGGAGAGAAGCCGGAAGTCTGCAGCTTGTGTGGCAAGATGTTTGCCCGATTGACGACTCTGCGCGTTCACATGCGCACGCATACAGGAGAGAGACTTTACAGTTGTAATGATTGCGGCAAGAGGTTTACTCAGAGCAGCACGCTCACTATACATAGACGCTACCATACCGGGGAGAGACCGTACCGATGTGAGAAGTTTAACAACAAAGAAACGTTGTCGCATCACGTGCGCGTCCACACTGGAGAGAAACCAGAAGTTTGCAATGTTTGCGGAAAAGTGTTTGCCCGGATGACGACCCTGCGCGTTCACATGCGCACACACACGGGAGAGAAACTTTACGGTTACAAAAACGAGTGGATCTGTCCGATTTGCCGGAAAAAGTTCGCGACAAAGAGGTACTTGACACGCCACACGCAGCGCCACAGCGCCGAGAAGAACTTACCTTGCGAGACGTGCGGTCGCAAGTTCCGAACAACATACGCTCTTCGGAGTCACATAAAACTGCATACAGGAGACGGAGTGTTCACCTGCGACAAATGTGAGAAAACCTTTGTGCAAAAAAATCTCTTGCTGAAACACTATCAATATCACGCCAAGGAGTATTCATGTTTTTGTGATTTCTGTGACAAAGGGTTCTACTGTAAAAGCCAGCTCATGGatcataaaaacacacacacggGGGAGCGAACTTTCACCTGTAATATCtgtgacaaaagttactttgcTAGGAACAGCCTGAGCACCCACAAGAAAACACACACCGGTGTGAAGAccgtaaataaaaaatacaaatgtgaTGTCTGCGGGAAATTCGTTGTTAAACTGTCGCTCCATCTGCAGCGTCACAAAGGGGAACGTAACTTTCTGTGCCATCTTTGCGGCAAGAAGTTTCACGAGAAGCAGACTCTGTTACTTCACGGGCGAGTCCACACTGGCGAGAAACCCGAGATCTGCAGCTTGTGCGGCAAGGAGTTCGCCCGAATGACTACCCTGCGCGTTCACATGCGCACGCACACAGGAGAGAAACTTTACGGCTGTAAAGATTGCGGCAAGAGGTTTACTCAGAGCAGTACACTCACCATACATAGACGCTACCATACGGGGGATAGACCGTACCACTGTGGTGTCTGCGAGAAGAAGTTTGTGTCCGTATCACTCCTTAACATGCATCAGAAAGCTCATTTTTAA
Protein Sequence
MVLRRTYLAKHVAANSEQRLIFGVTKDCIQGREFSPVTSAIRHLSTKFIPERNRKLQRLWQDVHPDDDPERSHAHAHRRETLQFSLERQVHTLSHKDQNEWVCPTCKRKFAIKKYLLRHLPSHVLGRNLGCETCGRKFRKQFELRSHKRIHTGEGVYTCVKCGKKFVHKSILNNHLRYHAKEYSCTCNICGKGFHHKSQLDEHMNKHTGERTFSCDICGKCYLIKSSLSYHKKVHTGENKNTVKHECVVCGKFYVNLTIHLKRHTGERNFLCDLCGKKFLDKKSVQLHRRMHTGEKPEVCHICGKAFARMTTLRCHMRTHTGEKLYACTECDKKFTQRSALTIHRRYHTGERPYPCNACEKKFFYVNLTIYLKRHTRERNFLCDLCGKKFRDNMSMPLHQRETGGVPPLQENFCLEDDSALPYVHPYRKEKLCVHRVSKERHVHTLSHKETNGWVCPTCKRNFVTKAYLLRHLPSHVLERNLGCETCGRKFRKHFELRSHRRIHTGEGVYKCVQCGKSFVHKSILNSHLRYHAKEYSCFCKICGKGYHHKSQLDEHSNKHTGERSFPCDVCGKSYLLKRSLAYHKKVHTGENKNTVKHECGICGKLYVNISKHLYRHTGERNFLCDFCGKKFNNKESLLLHGRTHTGEKPEVCNVCGKMFARMTTLRVHMRTHTGERLYSCNDCGKRFTQSSTLTIHRRYHTGERPYRCEVCGKEFTRRFVIYRVLAIGAGNETQPDFLKKAQNKRETTIAALNRKIEVKSSKNTKKFKCKFCDKEFGKSTERKDHTLTHKDNNNWVCPVCLKRFATKRNLLRHVPCYGAEKNLSCEVCGRKFRAPSALECHKKLHTGDDVFTCDKCDRVFNRKSSLRKHLKVHSKEYSCFCEFCDKGFYCKNQLSYHKNKHTGKRPLVCNICDKAYMVRSSLHAHMSMHRGEKQKRKKQECEVCGKFYANLSVHLKCHTGERNFLCNLCGTKFYEKQALLLHGRIHTGEKPEVCSLCGKMFARLTTLRVHMRTHTGERLYSCNDCGKRFTQSSTLTIHRRYHTGERPYRCEKFNNKETLSHHVRVHTGEKPEVCNVCGKVFARMTTLRVHMRTHTGEKLYGYKNEWICPICRKKFATKRYLTRHTQRHSAEKNLPCETCGRKFRTTYALRSHIKLHTGDGVFTCDKCEKTFVQKNLLLKHYQYHAKEYSCFCDFCDKGFYCKSQLMDHKNTHTGERTFTCNICDKSYFARNSLSTHKKTHTGVKTVNKKYKCDVCGKFVVKLSLHLQRHKGERNFLCHLCGKKFHEKQTLLLHGRVHTGEKPEICSLCGKEFARMTTLRVHMRTHTGEKLYGCKDCGKRFTQSSTLTIHRRYHTGDRPYHCGVCEKKFVSVSLLNMHQKAHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-