Tpod054843.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema podura
Gene Symbol
-
Assembly
GCA_033556935.1
Location
JAVRXN010000013.1:17484595-17504653[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 59 5.1e-05 0.0098 18.1 2.3 1 23 10 32 10 32 0.98
2 59 0.00014 0.026 16.7 0.3 1 23 38 60 38 60 0.98
3 59 2.1e-05 0.004 19.3 2.0 1 23 66 88 66 88 0.97
4 59 0.00013 0.026 16.8 5.5 1 23 93 115 93 115 0.98
5 59 0.00025 0.048 15.9 1.2 1 21 124 144 124 146 0.94
6 59 4.1e-06 0.00079 21.5 0.3 1 23 152 174 152 174 0.98
7 59 0.00033 0.063 15.5 2.4 1 21 180 200 180 202 0.95
8 59 2.6e-07 5e-05 25.3 1.0 1 23 208 230 208 230 0.98
9 59 0.18 34 6.9 3.6 1 20 236 255 236 258 0.94
10 59 0.023 4.5 9.7 2.7 2 23 309 330 308 330 0.97
11 59 0.081 16 8.0 1.8 1 20 336 355 336 358 0.93
12 59 0.0011 0.2 13.9 4.5 1 23 364 386 364 386 0.96
13 59 0.00015 0.028 16.6 0.6 1 23 392 414 392 414 0.98
14 59 1.1e-05 0.0022 20.1 2.3 1 23 420 442 420 442 0.98
15 59 0.011 2 10.8 6.1 1 23 447 469 447 469 0.98
16 59 2.9e-06 0.00056 22.0 1.4 1 23 478 500 478 500 0.98
17 59 0.00017 0.033 16.4 3.1 1 23 506 528 506 528 0.97
18 59 6.2e-05 0.012 17.8 0.3 1 23 534 556 534 556 0.98
19 59 5.8e-07 0.00011 24.2 3.7 1 23 562 584 562 584 0.98
20 59 0.25 49 6.4 0.1 1 13 590 602 590 604 0.90
21 59 2.9 5.6e+02 3.1 0.0 1 23 654 677 654 677 0.83
22 59 0.002 0.39 13.0 4.4 1 20 678 697 678 700 0.93
23 59 2.5e-06 0.00048 22.2 2.5 1 23 706 728 706 728 0.99
24 59 1.6 3e+02 4.0 0.9 1 23 738 760 738 760 0.96
25 59 0.0061 1.2 11.5 4.7 1 23 766 788 766 788 0.98
26 59 0.0021 0.4 13.0 0.2 1 23 793 815 793 815 0.98
27 59 2.5e-05 0.0048 19.1 1.6 2 23 825 846 824 846 0.98
28 59 0.00042 0.081 15.2 1.8 1 23 854 876 854 876 0.98
29 59 0.0003 0.058 15.6 0.3 1 23 882 904 882 904 0.98
30 59 3.5e-08 6.7e-06 28.0 0.9 1 23 910 932 910 932 0.98
31 59 0.00042 0.081 15.2 4.3 1 23 954 976 954 976 0.97
32 59 0.00024 0.047 15.9 0.5 1 23 982 1004 982 1004 0.98
33 59 3e-07 5.8e-05 25.1 1.2 1 23 1010 1032 1010 1032 0.98
34 59 7.2e-05 0.014 17.6 5.2 1 23 1037 1059 1037 1059 0.98
35 59 2.3e-05 0.0044 19.2 0.6 1 23 1068 1090 1068 1090 0.98
36 59 2.1e-05 0.004 19.3 1.0 1 23 1096 1118 1096 1118 0.97
37 59 5.5e-06 0.0011 21.1 0.8 1 23 1124 1146 1124 1146 0.98
38 59 5.8e-07 0.00011 24.2 3.7 1 23 1152 1174 1152 1174 0.98
39 59 0.25 49 6.4 0.1 1 13 1180 1192 1180 1194 0.90
40 59 0.00012 0.023 16.9 2.1 2 23 1236 1257 1235 1257 0.96
41 59 0.01 1.9 10.8 6.9 1 23 1263 1285 1263 1285 0.98
42 59 0.41 79 5.8 3.4 1 23 1291 1313 1291 1313 0.96
43 59 0.0033 0.65 12.4 1.9 1 23 1320 1342 1320 1342 0.97
44 59 9.4e-06 0.0018 20.4 0.7 1 23 1348 1370 1348 1370 0.98
45 59 7.9e-06 0.0015 20.6 1.4 1 23 1375 1397 1375 1397 0.98
46 59 0.034 6.6 9.2 1.9 1 20 1404 1423 1404 1425 0.92
47 59 3.7e-06 0.00071 21.7 0.3 1 23 1432 1454 1432 1454 0.98
48 59 6.7e-05 0.013 17.7 1.3 1 23 1460 1482 1460 1482 0.98
49 59 1.2e-05 0.0022 20.1 0.6 1 21 1488 1508 1488 1509 0.95
50 59 0.02 3.9 9.9 0.4 2 23 1601 1622 1600 1622 0.96
51 59 0.02 3.8 9.9 4.0 1 23 1627 1649 1627 1649 0.97
52 59 0.056 11 8.5 0.5 1 23 1655 1677 1655 1677 0.98
53 59 0.00054 0.1 14.8 1.3 2 23 1684 1705 1683 1705 0.97
54 59 0.33 64 6.1 0.4 1 23 1711 1734 1711 1734 0.94
55 59 9.3e-06 0.0018 20.4 1.7 1 23 1741 1763 1741 1763 0.96
56 59 0.00029 0.055 15.7 0.2 1 23 1768 1790 1768 1790 0.96
57 59 0.00018 0.035 16.3 1.6 1 23 1796 1818 1796 1818 0.96
58 59 2.7e-06 0.00052 22.1 0.8 1 23 1824 1846 1824 1846 0.96
59 59 0.00043 0.082 15.2 2.0 1 23 1852 1874 1852 1874 0.98

Sequence Information

Coding Sequence
ATGCTTCAACACACGACGGATCAGCCTTACTCGTGCGACATTTGCAACAAGGCCTTCAGGCATGAGTACGCATTGATCAATCACAAAAAATATCACGCAGGCATAAAAGAGTTTGTCTGCGACATATGCAACTATGCGTCCGATCGCAAAGCCTCCCTGAAAATACACATCAAGAGACATACACGCGAAGCCCTTCACCCCTGCAACATGTGCGAGAAAAGTTTCTACACAAATTCCGAACTGAAAGTACACAAGAATATACACTTTGGCAAGATGCACAAATGTGAAATTTGCGACAGGTCATTCACGCACAAAAGGAACATGTTGTTGCATCAGCAGTCCCACGACCCGATGAAGGAGGTGAGGATATTTCCGTGCGAGATTTGCGGTAAGACCTACCGCCGCAAGACCAGGCTAGCCGTGCACATCATGTGCCACAAGGGGGAGGGCAAGTTTGTATGCGACGTATGCGGAAAGATCGTGACGAGTAGCAGCTCCTTGAAAACACACAGGCGAGTTCACACAGGAGAGAAACCGTACGTGTGTGACCTGTGCGGGAAGGCGTTCAACTCGTCCAACTATCTGCGCGTGCATAAACGGTGTCATACTGGGGAGAAACCCCATACATGTGAGCGGTGTGGTAAATCCTTCACTCAGCGCTCGGCGCTCATTGTGCATATTAGGGTTCACACCGGCCAAAGGCCTTACGAGTGTCGCATATGCTACAGACAGTTTATTACCAGGACACTGTTGAATACTCATTCGAAATGTCACGAgtATGCAGATTTGTTTGAGAAATCTGATTCAACGTCGTGGAACACTCAAGACAGTTGCCACAGTAAAAACAAAGATGGTGAAGAGTTGATCAGGAGGTATAAGCTACCTACTATTGTCGTGAAAAGACAAACAATCTCACAGGCAAAGAGTTGTAATCTTTGCGCTAAATCCTGCAAGTCAGAAGCCGGGCTTAAAATCCATAAAAAGACCCATTTATCTAAAAAAGCATTCCACTGCGAGTTTTGCGGCAAAGTGTTTGCCGCCGTCAATCTGTTGTCGAGGCATCTGGCGTGTCACATGACTGATCGCCCGTTCCCGTGCGACATATGTCAGAAATCTTTCAAACGCAAACAGTGTCTCGTTGACCACAAGAAGTTTCACGCAGGTGTGAAGGCGTTTGTTTGTGACATTTGCAGCTACGCGACCAGTCACAAGGCCTCGCTTGAAGTCCACATAAAGAGACACACCTGTGAAGCGCACTTTCCCTGCGACACCTGCAGCAAAAGTTTCTACACCAACTCTGAACTTAGAActcataaaaacacacacatcgGCAAGATGCATAAATGTGAATTTTGTGAGAGGATATTCATACATAAGAAGAATATGTTGAGTCATCAAAAAAGTCATGACCCAGCGAGGGAAATAAAGAAGTACCCGTGCGAGATTTGTGGTAAAATCTACCGTCGCAAGCATAGACTCACGGTACACATTCGTTCCCACAGCGGGGAGCAGAAGTTTATTTGCGATGTCTGCGGGAAGTGCGTGACGAGCAGTGTGTCCTTGAAGACTCACCACAGGCTTCATACAGGGGAGAAGCCCTTTGTTTGCGACGTGTGTGGGAAGGCGTTCATCTCGACCAACTATCTGCTCATTCACAAGCGCTCACATTCCGGGGTAAAACCTCACACGTGCAAACAGTGCGGGAAATCGTTCACTCAGCGCTCGACGCTTGTTGTACATATGAGGTACCACACTGGTCAGAGGCCGTACGAGTGTCTCATGTGTGACAAGCGATTTGTTACCAGGACGTTGTCGCCACGTGGCTCTCGTAAGTGCAAGAGCACCATTGCCCTAAGAATGTTGCATAGAAAACCGACCAATGAAGAGACAGGAGACAAAGATAACCTCTTAGGGAACAAGGCCAATGTCGACCCTCACCTGGTCAAAGGAACGGATATTTTCCAATGTCAGACATGCGGCGTCGGCTTTTTGACCGAGGATGAGGTGGTGGGTCATGTACAAGTCGTCCACTTCCCTTGCAAGTACTGCGCAAAGGTCTTTACCCATTTCTTTCACTTGAAAAGACACTTACCGGTCCACATGAAGGAGCGGCCATACAAATGCGACAGATGTGGCAAAACCTATAAACGCTCTTTCGAACTTTCCAAACACATAAGACTTCACAAagaaaagaaagagaacatCAAGAGGTACAAGTGTGACTTTTGTGATTTCGCGACCGAATACAAACCGTCTATCGACGTCCAtaagaaacgacatttcaacgaCTTTCGGTTCAAGTGTGATCTGTGCGACAAAGGTTTCTATTACAACTGTCAATATCAGCAACACAAAGCAACGCACAATGGTGACGTGTACCCGTGCAAGGTATGCGAGAAACGTTTCCCCTTGCAGAAGAAGTTGGACGCTCATGCGAAAATACACGATCCGGAGCACCGGCAAGAACGCGTGACCTGTGAAATCTGCGGCAGGAGCTACCAGTTCAAGACGACTTACACGAGACACATGCGGACACACATTGACAGCGAGTCGCAAACCTTCATGTGTGACATCTGCGGCAAGCGCGTCATGAGCCGGGTGTCCCTGAGACATCACCGCCGGCTCCACACGGGCGAGAGGCCCTTTGTCTGTGACACCTGCGGGAAGCCGTTCAATTCCTCGGGCATATTGAGAGTCCATAAACGTTCGCACACCGGCGAGAAACCTTATTCTTGCGAGGATTGCGGCAAGTCGTTCACTCAACGCTCGACGCTCGTGGTACACATGCGCTATCACACAGGGGAACGCCCATACGATCTCTTGGCAAAGCACATGGCAAGTCACACGACAGATAGGCCCTTTCCTTGCGACCTCTGCCGGAAGACTTTCAAACGCAAACATGAACTCGTTAGCCACAAGAAGCAACATGAAGGTGTCAAAGATTTTGTATGTGACATTTGCAGCTACGCGACAAGCCATAAAGCCTCACTTGCCGTGCACATTAAGAGACACACGTGCGAAGCTCAATTCCCCTGCAACGTCTGCAACCGAAGTTTCTACACAAATTCTCAACTTCAGAACCATATAAACACTCACTACGGAAAGAAGCATCAGTGCGAGTTTTGCGGCAAGTCGTTCATCCACAAGTACAACATGTTGATCCACCAGAAATCCCACGACCCATCGAGAGACGTAAGGAAATTCCCATGCGAGATTTGCGGAAAAACTTATCAGCGCAGAAACAAACTCATGATGCACATTCGTCTGCACATGGGAGAGATGCGCTACATATGCGACATATGTGGGAAATGTGTGACGAGCAGTACGTCCTTGGAGACTCACCGAAGGGCCCACACCGGTGAGAAGCCGTTCGTCTGCGACCTTTGTGGGAAAGCGTTCAACTCTAACAACTACCTGCGGGTCCACAAGCGCTCGCACACCGGAGAAAAACCTCACACGTGTAAACAGTGTGGGAAATCGTTCACTCAGCGCTCCACACTTGTTGTACATATGAGGTACCACACTGGTCAGCGACCGTACGAGTGTCTCATGTGTGACAAGCGATTTGTTACCAGGACCTTgTGTTCACCACAATATGGTGGTGAGTGGTGGAATGAAGGTTTGTGTACATCTCCCGAGTCTCCGAGAGCCATAAAGGGGGGACCCCCGCTCTTAAAAGGTCTGAAAAAACAACCCGAAACCTTGGAATGCGACACTTGTGGGAAGAGGTGTAAGAGTAAAGCCAACCTTAACTTACACTCGAGAGTTCACGACCCTTCGAAACATCACAAGTGTAAAACTTGCGATAAAATATTTCTGGATAAGCACCATCTCGCAAGGCACACGGCGACCCACAACAAAGAGAGATCGTACGCATGCGACGTCTGCGACAAAACTTACAAGTGTCCTTTCAGGCTATCAAGTCATAAAAAAAGTCACTGCGAGAAGAAAAAGACGCACGTGTGCGATATCTGCGACTACTCGACAATCTACAGGTACTATCTGGAAATCCACAAAAAAAGGCATGCGTCTGATTTTACGTTCAAGTGTGATCTGTGCGGGAAAGGTTATTACACCGCTACGGATCTTAAAAGGCATAGAATGATCCATGGTGGGAGTAAACACACATGTGACGTATGCGGCAAAGAGTTTACGATGGATAAAAACCTGAAAGACCATATGAGGATCCATAAATCCAACAGAAGACGTTTCAACTGCGCACTTTGCGgtaaaagctatttttatacTAGCCAATTGAATGTGCACAACTGCACCAAAGGAGAGGCTGTCAGATACGTCTGCGATGTTTGCGGGAAAACCTTGACGAGTGCGTCGTCCCTTCAGAGCCACCGCCGGCTACACACAGGGGAGAAGCCGTTCATGTGTGATATCTGTCTGAAGTCCTTCAACACGGCCACTTACTTGCGCATACACAAGCGCTCGCACACGGGAGAGAAGCCCCACGTGTGCAGTCAGTGTGGCAAGTCTTTCACCCAGCGCTCGACGCTTGTCATTCACTACAGGTGGATGACAGGGAATTATGGTGACCTCACTGAacaattaagaaatatttcacCAGATGTATCATCAGATCCCCAAAGGCTTCCAAAGCATTCCTGTAAATCACAGGTGAAGGATCCTCAGGAGTTAACGGTTAGAAGTGAAATAGTGGAACGTAAAggctcaaactattttaaggGTCCAATAACAAATCAAAATCCAGACCCTTATAAAACGCCCACACATAATCAGCCCAACAGTCTACGTGTGAAGAAACCTCGTGGCACTAAAGGCCCGCTCATTTGCGACACGTGCGGTAAGTTGTTCCCTTCCGTCAAGAGACTAAACATGCACAGGAAGATTCACACCGACATCCGTTACACTTGCGACATTTGCCGCAAGACTTATAAAAGTGTCAGCATGTTTTATACCCACAAGAAATTCCATAAAAGTTTGAAAACGTACGACTGTGATGTGTGCGACTACCGTACTCCTTGGAAAGGGAATATGAACAATCATCGCAGGAGACATTTCGGTGAGACCAAAGTTACCTGTGACATGTGTGATAAAGGGTTCTACAACAAGTGTGATTTGGAAGAACACAAAAATATTCACACCGGgaacaaaccttttaaatgtgACATTTGCGAGTCGCCGTTTTGGTCCAAAAGGAGTCTATGGGATCATAAAAAAGCACAGCACAACTCAAACTTGAAAGAGTTCAAATGCACTCAATGCGGCAAAAGCTTTGTTTTCAAGAGCCGGCTAAACAGGCACTTGGAGGCCCATCGGGGGAAACGTTTCATGTGCGACGTTTGCGGCAAATCCGTGACGTCGGAGCAGTCTCTGAGGGCTCACAAAACCATCCACACGGATGAGAAGAAGTTCCTTTGCGACGTCTGCTCAAAGGCGTTCAACACAACGCAATCCTTGAAACTTCACAGGCGTACGCACACAGGAGAAAAGCCATACCTTTGCAAGGAATGTGGCAAGGCGTTCACCCAGCGCTCGACGCTTGTCGTCCACACTCGTTACCACTCTGGGGAGCGCCCGTACATCTGCCACCTATGTTCCAAAGGTTTTGTTGCAAAGACCCACTTGAACGCTCACATTGAAAAACACAGCTGA
Protein Sequence
MLQHTTDQPYSCDICNKAFRHEYALINHKKYHAGIKEFVCDICNYASDRKASLKIHIKRHTREALHPCNMCEKSFYTNSELKVHKNIHFGKMHKCEICDRSFTHKRNMLLHQQSHDPMKEVRIFPCEICGKTYRRKTRLAVHIMCHKGEGKFVCDVCGKIVTSSSSLKTHRRVHTGEKPYVCDLCGKAFNSSNYLRVHKRCHTGEKPHTCERCGKSFTQRSALIVHIRVHTGQRPYECRICYRQFITRTLLNTHSKCHEYADLFEKSDSTSWNTQDSCHSKNKDGEELIRRYKLPTIVVKRQTISQAKSCNLCAKSCKSEAGLKIHKKTHLSKKAFHCEFCGKVFAAVNLLSRHLACHMTDRPFPCDICQKSFKRKQCLVDHKKFHAGVKAFVCDICSYATSHKASLEVHIKRHTCEAHFPCDTCSKSFYTNSELRTHKNTHIGKMHKCEFCERIFIHKKNMLSHQKSHDPAREIKKYPCEICGKIYRRKHRLTVHIRSHSGEQKFICDVCGKCVTSSVSLKTHHRLHTGEKPFVCDVCGKAFISTNYLLIHKRSHSGVKPHTCKQCGKSFTQRSTLVVHMRYHTGQRPYECLMCDKRFVTRTLSPRGSRKCKSTIALRMLHRKPTNEETGDKDNLLGNKANVDPHLVKGTDIFQCQTCGVGFLTEDEVVGHVQVVHFPCKYCAKVFTHFFHLKRHLPVHMKERPYKCDRCGKTYKRSFELSKHIRLHKEKKENIKRYKCDFCDFATEYKPSIDVHKKRHFNDFRFKCDLCDKGFYYNCQYQQHKATHNGDVYPCKVCEKRFPLQKKLDAHAKIHDPEHRQERVTCEICGRSYQFKTTYTRHMRTHIDSESQTFMCDICGKRVMSRVSLRHHRRLHTGERPFVCDTCGKPFNSSGILRVHKRSHTGEKPYSCEDCGKSFTQRSTLVVHMRYHTGERPYDLLAKHMASHTTDRPFPCDLCRKTFKRKHELVSHKKQHEGVKDFVCDICSYATSHKASLAVHIKRHTCEAQFPCNVCNRSFYTNSQLQNHINTHYGKKHQCEFCGKSFIHKYNMLIHQKSHDPSRDVRKFPCEICGKTYQRRNKLMMHIRLHMGEMRYICDICGKCVTSSTSLETHRRAHTGEKPFVCDLCGKAFNSNNYLRVHKRSHTGEKPHTCKQCGKSFTQRSTLVVHMRYHTGQRPYECLMCDKRFVTRTLCSPQYGGEWWNEGLCTSPESPRAIKGGPPLLKGLKKQPETLECDTCGKRCKSKANLNLHSRVHDPSKHHKCKTCDKIFLDKHHLARHTATHNKERSYACDVCDKTYKCPFRLSSHKKSHCEKKKTHVCDICDYSTIYRYYLEIHKKRHASDFTFKCDLCGKGYYTATDLKRHRMIHGGSKHTCDVCGKEFTMDKNLKDHMRIHKSNRRRFNCALCGKSYFYTSQLNVHNCTKGEAVRYVCDVCGKTLTSASSLQSHRRLHTGEKPFMCDICLKSFNTATYLRIHKRSHTGEKPHVCSQCGKSFTQRSTLVIHYRWMTGNYGDLTEQLRNISPDVSSDPQRLPKHSCKSQVKDPQELTVRSEIVERKGSNYFKGPITNQNPDPYKTPTHNQPNSLRVKKPRGTKGPLICDTCGKLFPSVKRLNMHRKIHTDIRYTCDICRKTYKSVSMFYTHKKFHKSLKTYDCDVCDYRTPWKGNMNNHRRRHFGETKVTCDMCDKGFYNKCDLEEHKNIHTGNKPFKCDICESPFWSKRSLWDHKKAQHNSNLKEFKCTQCGKSFVFKSRLNRHLEAHRGKRFMCDVCGKSVTSEQSLRAHKTIHTDEKKFLCDVCSKAFNTTQSLKLHRRTHTGEKPYLCKECGKAFTQRSTLVVHTRYHSGERPYICHLCSKGFVAKTHLNAHIEKHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-