Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0033 71 5.0 0.0 10 40 23 53 21 56 0.89

2 5 0.0013 29 6.2 0.0 10 40 63 93 54 95 0.86

3 5 0.0021 46 5.6 0.0 10 40 83 113 78 118 0.89

4 5 0.0018 40 5.8 0.0 10 40 138 168 132 171 0.88

5 5 0.0031 68 5.0 0.0 10 40 178 208 170 210 0.87

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0033	71	5.0	10	40	23	53	21	56	0.89
2	5	0.0013	29	6.2	10	40	63	93	54	95	0.86
3	5	0.0021	46	5.6	10	40	83	113	78	118	0.89
4	5	0.0018	40	5.8	10	40	138	168	132	171	0.88
5	5	0.0031	68	5.0	10	40	178	208	170	210	0.87

Coding Sequence: ATGACAGTATTTGCTGTTCACGGTAAGGATGCTGTACCGATCGATAGCATAGAAGAGGATCTTGCAAGATGTGACAATCTAGCAGCCAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTATCAGACAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCATGGAGATGTGACAATCTAGAAGCCAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTAGAAGCCAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTATCAGACAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATACAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTAGAAGCCAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTAGAAGCCAAACTCTCAACAGAGAACATCGAGAATGGTCTTGCAAGGAGATGTGACAATCTAGCAGCCAAACTCTCAACAGAGAACATTGAGAATGGTCTTGCAAGGAGATGTGACAATCTAGCAGACAAACTCTCTACAGAGAACATTGAGAATGGTCTAGCATAG
Protein Sequence: MTVFAVHGKDAVPIDSIEEDLARCDNLAAKLSTENIENGLARRCDNLSDKLSTENIENGLAWRCDNLEAKLSTENIENGLARRCDNLEAKLSTENIENGLARRCDNLSDKLSTENIENGLARRYKLSTENIENGLARRCDNLEAKLSTENIENGLARRCDNLEAKLSTENIENGLARRCDNLAAKLSTENIENGLARRCDNLADKLSTENIENGLA

Sequence clustering based on sequence similarity using MMseqs2