Tpod057195.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- Smarcc2
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:53418778-53428305[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2 1.2e+04 -1.7 0.0 28 38 7 17 6 18 0.86 2 2 4.3e-15 1.6e-11 46.0 0.2 3 44 61 102 59 104 0.95
Sequence Information
- Coding Sequence
- ATGGATATAGTAGGTGGTAAACACTTACCCTCCCTCACAACAGTCAAGTGCATAGGAGCAGTGATATCATTCTTCATCAAGGAAGACATAAACAATGGCTTCTTTACAACACTCAGCTTCACAAAGTATGTTCGCAAGCCTGCAGCACTCCGCAACAAAACAGCAGCCAGCCTAACCAGGGAATGGACAGAACAGGAAACTCTTCTGTTGTTGGAAGGACTAGAACTGTTCAAAGATGACTGGAACAAGGTGTGTGAGCATGTGGGCAGTCGGACCCAGGATGAATGCATCCTTCACTTCCTTAGACTGCCCATAGAAGATCCTTACTTGGAGGATCATGAAGCAGAAAGCGTGCCAGCAAAGGAATGGAATCAGCACGGCCAATCCACCTTCCAGGGAAAGTTTGGTTTAGGTATTGAGTCACTGCACAAGCATGATGTGGTAGAGCTTCATAATGCTGATAGTACATTCTCTGTCGTGTTGCCAGAGGAATATCCACCAGAAGTCCTGACACCGGTGGTGTTAAATAAGGGGCCGCGACCCAGACATGGAGCGCTCTACGTCAGGGTGTTATTCTGA
- Protein Sequence
- MDIVGGKHLPSLTTVKCIGAVISFFIKEDINNGFFTTLSFTKYVRKPAALRNKTAASLTREWTEQETLLLLEGLELFKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDHEAESVPAKEWNQHGQSTFQGKFGLGIESLHKHDVVELHNADSTFSVVLPEEYPPEVLTPVVLNKGPRPRHGALYVRVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -