Tpod009306.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- ttk_3
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000003.1:18745847-18759758[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-08 2.5e-05 25.7 0.0 4 41 220 257 217 261 0.89
Sequence Information
- Coding Sequence
- ATGTCAAGTGTTTATTTCAAGTGGGACACCCATGTAGACCTGCTCCGCTCCTTGGAGCGCCTACTTCAGACTGAATGCATGGTTGACGTAACCATCGCTGTAGAGGGCCAACTACTCAAGGCACACAAGTTGGTGCTGTTGCATGCAGGTTGGTGCCAATACTTCCACACCATGTTAAGCTCAATTCCTGCCACCCACCCTATTATATTTATGCGAGATGTTAAACTGGTCGAAATGAAGGCCCTGCTGAGCTTCATGTACCGCGGAGAGGCTTGTGTCAGTCAGGAGGAGGTGGAAGGTGTACTCAGGACTGCAGACGCTTTGGGGATCTCAGGTCTGACACACATATCATGGGCAGACACTGCAGAGTACATCCAAGTCGATGAGACGTCACAGTGTGATGAGAGCGATTTTGTGACATTTGTTATTGGCGGTGAAGTTGGCGAGAAAGAGAAGAAGGATGAACCAATGAGGGAACTTGAGACAAGCAGCCTGCATAATAAGGCTGGCAGTGTTGCAGTTCACAATACCATCCAAGATGCAAACTGCAAGTCATCACATGACAGCTCACAAGTTATTGACGAGACCACCCCACAGATCAATCTTCCCACCACTTCAGAATGTTCAAGGCCACCCGGACGCCAATACACCAAAAAAGATTTGCAGCAAGCGCTAGATCTGATCAGCGCCGGACAGATGGGTATCAAGCCCGCAGCCCGAGCATTCAGCATCCCCGTGGCAACGCTGCACCACGCGACAAGACGCAGGAACATTACCAGCCCCATGCAGCAAGGAGGGTACCACAGCTCTGCTCACAAGTCTCAGGAAAGGGGGGCTACCCGTTTAGCACTCGGGTCTGATTCTGTGACTCCAGGAACAGTGCAACATTCACATGATCATATTGGTCATACCCTACCAGAGGGCATGCTTGATACTGGGCAATGA
- Protein Sequence
- MSSVYFKWDTHVDLLRSLERLLQTECMVDVTIAVEGQLLKAHKLVLLHAGWCQYFHTMLSSIPATHPIIFMRDVKLVEMKALLSFMYRGEACVSQEEVEGVLRTADALGISGLTHISWADTAEYIQVDETSQCDESDFVTFVIGGEVGEKEKKDEPMRELETSSLHNKAGSVAVHNTIQDANCKSSHDSSQVIDETTPQINLPTTSECSRPPGRQYTKKDLQQALDLISAGQMGIKPAARAFSIPVATLHHATRRRNITSPMQQGGYHSSAHKSQERGATRLALGSDSVTPGTVQHSHDHIGHTLPEGMLDTGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446722;
- 90% Identity
- iTF_01446722;
- 80% Identity
- iTF_01449740;