Tpod058666.2
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:66750403-66752265[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-10 1.7e-07 32.6 0.0 3 41 20 58 18 62 0.92
Sequence Information
- Coding Sequence
- ATGCCGAGAAAGGTTATTGGGGCCAAACCGAGGGCTGTATTGAAGAGGTGGAAGAGTACAGATATGATAAAGGCGATAACTTCATtgagagaaaagaaaatggGATTAAGAAAGGCAGTAAAACTGTATAATGTTCCGCAGACAACATTGCAAAGATTTGTTCATAATGGGATGTCCCCTGAACAATGCGTCATGTTATCAGTAGGTCGAAAGCCTGTTATACCCGTAGAGTTGGAACAACAATTAGTTGAATACTTGGTGGAAATGGAAAATCGATTCTATGGTTTGACTAGGGAAGACGTAAAAAAAATGGCTTATCACTTAGCAGTACGGAATAATATTGAACATCCTTTTGGGACTAATGAAGCTGCTGGTAGGGCATGGTTTGATCTTTTTATTAGAagacataaaaacaaacttacGATCCACAAACCAACAGGCACCTCTTATTCAAGAGCCAATGGTTTCAATGTGGAGTCTGTGAATAAGTTTTTTGACATACTACAGGCAGAATATGACAAGCATCCTTATCCTGCAGACCGTGTATTTAATGTAGATGAAACTGGTCTCACAGTTGTACAGAGCAAAATACCACATGTGGTGGGATTAAAAGGAAAACGGCAAGTAGGTTCCATCACGTCTGCAGAGCGGGGCTCTCTGGTAACAGTCATATGTTGTATGAGTGCAGGGGGCACATTCATTCCTCCCATGATGATTTTTCCCAGAAAAAACATGACTGATATTTTGATGAAAGGAGCTCCACCTGGTTCCATCGGTAGATGCCATCCATCTGGATGGATTCAGATGAACTTGTTCACTGAATGGTTTCAGCATTTTCTTCATAAGACTAACCCTACCAAAGCGTCTCCTGTTTTGCTCTTATTGGATGGACACAATACCCATACCAGGAACATTGAGATTATTGACCTTGCTCGTACAAATCATGTCACTATCCTAAGCATACCTCCACATACATCCCACAAGTTGCAGCCATTGGATAAGACATTCATGGGAGCTCTGAAGAACTATTATAGTGAGTATGCTCGCCAATGGTTGCGCCATAACGATCGCCCACTAAGTCCATATGACATCGCAGAACTTTTTGGTAAAGCTTATCTACAGTGCCAAACTGGATCGATTGCTGTTAAAGGATTTGAGAAAACCGGGATCTTTCCATGTGATCGTAATGTTTTTGGAGATATCGACTTCATTGCCTCAACCCCAGTATTGTCCAACATCACGGAAAATAGAAGTAAGGCTATAGTTATGTCATCTGAAGAGGCTACATTTCCCcctagaaaaaatatagaacCACCTCGACCTAACGATCTTCATCAGCCAAATGAGGTCGACCGACGAGAAGCTGGTTGCTCCAAGTCCTCACAGATTCAAGAAAGTACTACGTCTGTGTCTCCCAAAGACATATTGCCAGTCCCTCAGCCAAAAAAGAAGTATTCAAATAAGGGCCGTAAGCCCTCTACTGCCGCTGTAATTACGGCTTCACCATATAAATCGTCATTAGAAGAATCTTTCTACAAACCAAAAGTTAGAATCGCTAAGAAGCCAAGAGGCAAAtcaaacacaaaaaacaaaacaaagaaatttaGCAGAAGACTAAAGCTTGAAGACTCTGATGAAGAATCAATTAATGCAGAGGTCACATCAGGTGAATTTGAACTGGAATTTCCAATGGGTGAACTGCCTCCTGCCGAAGAGGATGCGGTTTGCATATTTTGCGAAATTGCATTTTCAAATGACACAAGTGGAGAACTTTGGGTACAATGTCAACAGTGCGAAATGTGGTCACATAGTGAGTGTGCAGGATGCGAGAATGACCATTATGTGTGTGACTTTTGCAAATAG
- Protein Sequence
- MPRKVIGAKPRAVLKRWKSTDMIKAITSLREKKMGLRKAVKLYNVPQTTLQRFVHNGMSPEQCVMLSVGRKPVIPVELEQQLVEYLVEMENRFYGLTREDVKKMAYHLAVRNNIEHPFGTNEAAGRAWFDLFIRRHKNKLTIHKPTGTSYSRANGFNVESVNKFFDILQAEYDKHPYPADRVFNVDETGLTVVQSKIPHVVGLKGKRQVGSITSAERGSLVTVICCMSAGGTFIPPMMIFPRKNMTDILMKGAPPGSIGRCHPSGWIQMNLFTEWFQHFLHKTNPTKASPVLLLLDGHNTHTRNIEIIDLARTNHVTILSIPPHTSHKLQPLDKTFMGALKNYYSEYARQWLRHNDRPLSPYDIAELFGKAYLQCQTGSIAVKGFEKTGIFPCDRNVFGDIDFIASTPVLSNITENRSKAIVMSSEEATFPPRKNIEPPRPNDLHQPNEVDRREAGCSKSSQIQESTTSVSPKDILPVPQPKKKYSNKGRKPSTAAVITASPYKSSLEESFYKPKVRIAKKPRGKSNTKNKTKKFSRRLKLEDSDEESINAEVTSGEFELEFPMGELPPAEEDAVCIFCEIAFSNDTSGELWVQCQQCEMWSHSECAGCENDHYVCDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449471;
- 90% Identity
- iTF_01449471;
- 80% Identity
- -