Tpod020338.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000005.1:51476347-51478086[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-10 1.1e-07 33.2 0.0 1 38 8 45 8 46 0.96
Sequence Information
- Coding Sequence
- atGGCTCCGAGGAAAAAATGGGATCCAGAACAAATGAAGGCGGCAGTTGCGGCCATGCGCAATAAGGAAATGGGAAGTCTTAAAGCATCCCGTGTCTTTCATGTTCCTCAAACTACACTAGAACGCTACGTTAAGGATTTAGATAAATGTCCTAGTGACGTGGTTCAAACCAAAATAGGCAGGAAGCCAACACTACCCTTTGAATTAGAAAAGAATCTCGCAGACTTATGCCTTATTATGGAAAACAGATTATTCGGCCTTTCTCAAAGGGATGTTCGTCGCATGGCATATCAGATTGCTGTAAAAAACGGAATTGCGAACCCCTTCTCCAAAAAGAATGAGCAGGCCGGGAAAAAATGGATGAAGAATTTCTTAAGAAGAAATCTACAGCTTGCTGCTCCTCAAAGTCTCTCAATGACCCGAGCAAAGAGTTTCACTCCAGAGGCAGTTTCCaagttttttgatatttttgaacCTACAATGGACAGTATCAATAATTCTCCATCTAGGTTATACAACTGTGACGAAACCAGCATATCAATTGTACAACATAAGCACACAAAAGTTGTGGGTCTAAAGGGAAAGCGACAAATTGGAGCACTTCAAGCGACTGAACGAGAGGCTCTTATAACTGTTGTCACTTATATGAGCCCTGCAGGCCACTTTGTTCCTCCATTAATTATCTTCCCTCGAAAGAACATGAAGATGGAACTCATGAATGGGACTCCCCCTGGCTCTATTTATTCTTGCCATCCGTCTGGCTGGATACAAACGGACATATTTACAGATTGGTTTCGTCACTTTATTTCCAGCGTGAAGCCTACTGCGGAGGATCCTGCAATTCTCGTATTAGATGGCCACTATTCTCACACGAGAAATATAGATGTGATAAACATGGGGCGAGAGAATCATGTGGCCATTGTGTGTTTGCCCCCCCTTAGCACTCACAAAATGCAGCCACTCGATGTCTCATTTATGGGTCCTTTTAAGACGTACTACGCCCAGGAAGTTGAGCAGTGGATTCGAAGAAATCCTGGACGAGTGGTTACTGTCTACCAAATAGGAGACATTTTTGGAAAAGCGTACATGAGGGCAGCGACTGCTAGTGGTTTCCGCAAAACTATATTGTTTCCTTGTAATAGGAACAACTTCCGACCTCATGATTTTGCTGTTCTTGAAGAGCCTGAAGAGAACAATGCTGAGAGCCCACAACAGCTTGATGACCTGCAGGAGCCTCAACCAGGGACATCCCATGATCCTGATCCTGTTCCTGTAACAACGCCACCTCAGATAAGGCTTATCCGGGCGTCTAACATCAAATCAATTCCCACTATAAAAATTCAGCCTACTACAAGAAAGTCCCGAACTGGATCTGCCCAGCTCATCACCGGATCACCTTATAAACAACATCTAGCAGAGTCGCAGAAAAAGGGTCCTTCACCAAAGAGAAACGGTAAGACTACGACTATCAAGAAACGCTCTGAATTGAAAACACCAGTTTACCGTCGTAAGAAAAGGGCTGCTAAACATTCGGAATATTCAACAGAATCTGAGGATAATATTTCACTAGTTGATTCTATTGACGATCTTGATTTGGAAAGTGAAAGTGAATCTGATGCAGAGTGTATTATTTGTGCAGGATTATTTTCTGATGACCATGAAGGTGAGAATTGGGTTCGATGTGTGGTCTGCAACAAATGGGCACACACAGATTGTGTTGAtccatttaataaacaatga
- Protein Sequence
- MAPRKKWDPEQMKAAVAAMRNKEMGSLKASRVFHVPQTTLERYVKDLDKCPSDVVQTKIGRKPTLPFELEKNLADLCLIMENRLFGLSQRDVRRMAYQIAVKNGIANPFSKKNEQAGKKWMKNFLRRNLQLAAPQSLSMTRAKSFTPEAVSKFFDIFEPTMDSINNSPSRLYNCDETSISIVQHKHTKVVGLKGKRQIGALQATEREALITVVTYMSPAGHFVPPLIIFPRKNMKMELMNGTPPGSIYSCHPSGWIQTDIFTDWFRHFISSVKPTAEDPAILVLDGHYSHTRNIDVINMGRENHVAIVCLPPLSTHKMQPLDVSFMGPFKTYYAQEVEQWIRRNPGRVVTVYQIGDIFGKAYMRAATASGFRKTILFPCNRNNFRPHDFAVLEEPEENNAESPQQLDDLQEPQPGTSHDPDPVPVTTPPQIRLIRASNIKSIPTIKIQPTTRKSRTGSAQLITGSPYKQHLAESQKKGPSPKRNGKTTTIKKRSELKTPVYRRKKRAAKHSEYSTESEDNISLVDSIDDLDLESESESDAECIICAGLFSDDHEGENWVRCVVCNKWAHTDCVDPFNKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449467;
- 90% Identity
- iTF_01449462; iTF_01449464; iTF_01444646; iTF_01444652; iTF_01447447; iTF_01447426; iTF_01447427; iTF_01448395; iTF_01448390; iTF_01448393; iTF_01449459; iTF_01449467; iTF_01449470; iTF_01449463; iTF_01446427;
- 80% Identity
- -