Tpod050383.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000012.1:4247514-4249380[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 4e-08 34.6 0.0 2 37 11 46 10 51 0.93
Sequence Information
- Coding Sequence
- ATGACGAAGCGAAAATATGGAGCTTGGAGTGAATCGGATATGGAAAGAGCCCTCGCAGCTTATAGAAATGGGGACATGGGTTTTAATGAATGCTGTCGCCAATACGGTATTTCAAAGCCAACTCTCAAGCGCCACTTAGACTGCAAGAATGTTAAAGCTAATAACGGTACAAAGGCTCTAGGCCGTACAACTACCCTGCCACCTGAAATTGAAAAAGAGCTTGTcaatcacatttttaaattagaggagCTACTTTTTGGCCTTACAATTGCTGACGTGCGCAAGTTAGCATATCAAATAGCAGAGCAGAATCACATCCCTCATAACTTTAACCGAGAGACCAAAATGGCAGaaAAGATTGTTGATGAAAACAAGATCGACGCTACTCGATTGTTTAATGTTGATGAGTCTGGTATTACCACCGTGCAAAATAAATGCCAGAAAGTGCTAGCTAAAAAAGATACACGCCAAGTTGGATCAATTTCAAGTGGGGAAAGAGGTGTAAATACAACAATAGTATGTTGCACTAGTGCATCGGGAACCTATGTCCCtcccatgttaatttttaagcgaATGAGAATGGctaatgaattaaaagttgGGACTCCACCTGGGGGTTTGGTTGAGGTTTCTGAAACAGGCTACATAAACAGTGACCTCTTCGTCCAGtggctaaaacattttatttctgcCGTCAAACCAAACAACGATAGCAAAATTCTCTTAGTTCTAGACGGCCACACAACACATTCAAAGAACTTGGAAGCTTTGGAAATAGCAAGAGAAGCCGGAGTAATTATGTTGCAGTTGCCTGGCCACATAGCTCATCGGGTTCAGCCATTAGACAAGTCGTTTTTTAAGCCACTGAAAGGGTACTACACACAAGTGGTTGAAAAAGGGCTTCGTACCAATCCAGGACTGTGTGTTACACAATACCAGGTGACTCAACTTGTGGCAGAAGTCTATGCAAGGGCAGCGACAGTTGAGAATTCCATTAATGGATTCCGTGGATGTGGAGTCTGGCAAGTTGACCGTAATGTGTTTAAGGACTCTGACTTTTTACCATCTGAATATCTTGAGCCTTCAAAAGATACCAATGTAGATGCACCACTTACCAAAGATGTCACCATTGGACCACCCATTGCACCTACTGCAGATGAAATCAATGACCGACCGGATGTTGCAGTAAAGCCAAAGGCTGGACCACCCAACACCTCTCAACTTAATGTGTCAATTGAAGCTATCTCACCAATTCCCAAACCCACCCATAAAAAAGTGTCAAAACGAGGTGGGTTGACAAACAAAGGCCTACAACGAGCTACTGTGCTAACAAGCAGTCCATACAAGAATGATTTGCAAACAGCAAAAGAATTGCAAATGGCACAGGCCAaagtaaaacagttgaaaatgaaaatagagaagGCCAAAGCAAATGAATTGAGACTGGCAAAgcccaagataaaaaaagaagtagccaatgctaagaaaaaaatgtcatctgtgtggagaaatttagaaaaagcagATCTGCAAACCAACGGAGAAAGTCTACCATCTACTTCAACACAACCTGATGTTAGTATTGAAATCCAGCAAGAAGAATGGTTTTGTTCCGTATGTGAAGATCATTATGTTGAGGATATGGTGCAGTGTTTGGTATGCTGGTCCTGGGTGCATGAAAGATGTGCAGGGGTCAAGTCaggattaaaacagtttatttgtgTGGACTGTaaatag
- Protein Sequence
- MTKRKYGAWSESDMERALAAYRNGDMGFNECCRQYGISKPTLKRHLDCKNVKANNGTKALGRTTTLPPEIEKELVNHIFKLEELLFGLTIADVRKLAYQIAEQNHIPHNFNRETKMAEKIVDENKIDATRLFNVDESGITTVQNKCQKVLAKKDTRQVGSISSGERGVNTTIVCCTSASGTYVPPMLIFKRMRMANELKVGTPPGGLVEVSETGYINSDLFVQWLKHFISAVKPNNDSKILLVLDGHTTHSKNLEALEIAREAGVIMLQLPGHIAHRVQPLDKSFFKPLKGYYTQVVEKGLRTNPGLCVTQYQVTQLVAEVYARAATVENSINGFRGCGVWQVDRNVFKDSDFLPSEYLEPSKDTNVDAPLTKDVTIGPPIAPTADEINDRPDVAVKPKAGPPNTSQLNVSIEAISPIPKPTHKKVSKRGGLTNKGLQRATVLTSSPYKNDLQTAKELQMAQAKVKQLKMKIEKAKANELRLAKPKIKKEVANAKKKMSSVWRNLEKADLQTNGESLPSTSTQPDVSIEIQQEEWFCSVCEDHYVEDMVQCLVCWSWVHERCAGVKSGLKQFICVDCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446460; iTF_01446461; iTF_01446462;
- 90% Identity
- -
- 80% Identity
- -