Tpod039656.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000010.1:19301350-19302231[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-11 2.4e-08 35.4 0.0 2 37 11 46 10 48 0.94
Sequence Information
- Coding Sequence
- ATGACGAAGCGAAAATATGGAGCTTGGAGTGAATCGGATATGGAACGAGCCCTCGCAGCTTATAGAAATGGGGACATGGGTTTTAATGAATGCTGTCGCCAATACGGTATTTCAAAGCCAACTCTCAAGCGCTACTTAGACTATGTCCCtcccatgttaatttttaagcgcATGAGAATGGctaatgaattaaaagttgGGGCTCCACCTGAGCTTTCTGAAACAGGCTACATAAACAGTGACCTCTTCATCCAGtggctaaaacattttattgctgccGTCAAACCAAACAACGCTAATAAAATTCTCTTAGTTCTAGACGGCCACAATACACATTCAAAGAACTTGGAAGCTTTGTATATAGCAATAGAAGCCGGAGTAATTATGTTGCAGTTGCCTGGCCACACAACGCATCGGGTTCAACCATTAGACAAGTCGTTTTTTAAACCACTGAAAGGGTTCTACACACAAGTGGTTGAAAAATGGCTTCGTACCAATCCAGGACTGTGTGTTACACAATACCAGGTGACTCAACTTGTGGCAGAAGCCTTTGCAAGGGCAGCGACAGTTGAGAATTCCATTAATGGATTCCGTGGATGTGGAGTCTGGCCAGTTGACCGTAATGTGTTTAAAGACTCTGACTTTTTACCAGCTGAATATCTTGAGCCTTCAGAAGATACCAATGTAGATGCACCACTTACTAAAGATGTCACCAATGGACCACCCACTGCACCTACTGCAGATGAAACCAATGACCAACCGGATGTTGCAGTAAAGCCAAAGGCTGGACCAGCCAACACTTCTCAACTTAATGTGTCAATTGAAGATATCTCACCAATTCCCAAACCcaccaaaaaaaagtgtcaaaacgAGGTGGGTTGA
- Protein Sequence
- MTKRKYGAWSESDMERALAAYRNGDMGFNECCRQYGISKPTLKRYLDYVPPMLIFKRMRMANELKVGAPPELSETGYINSDLFIQWLKHFIAAVKPNNANKILLVLDGHNTHSKNLEALYIAIEAGVIMLQLPGHTTHRVQPLDKSFFKPLKGFYTQVVEKWLRTNPGLCVTQYQVTQLVAEAFARAATVENSINGFRGCGVWPVDRNVFKDSDFLPAEYLEPSEDTNVDAPLTKDVTNGPPTAPTADETNDQPDVAVKPKAGPANTSQLNVSIEDISPIPKPTKKKCQNEVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449515; iTF_01449522; iTF_01449553; iTF_01449556; iTF_01449495; iTF_01449493; iTF_01449494; iTF_01449433; iTF_01449438; iTF_01449440; iTF_01449447; iTF_01449483; iTF_01449485; iTF_01449444; iTF_01449445; iTF_01449446; iTF_01449450; iTF_01449486; iTF_01449487; iTF_01449488; iTF_01449489; iTF_01449497; iTF_01449498;
- 90% Identity
- iTF_01449495;
- 80% Identity
- -