Tpod020387.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000005.1:53013470-53024695[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-06 0.00042 21.8 0.0 1 29 111 139 111 141 0.95 2 3 1.8e-17 5.8e-15 56.5 0.0 3 45 207 250 206 250 0.98 3 3 5.9e-19 1.9e-16 61.3 0.1 1 43 257 300 257 301 0.97
Sequence Information
- Coding Sequence
- ATGCGGATAACACTATCGACAGATTTACGAGCTCATGGCCAGCCAAGAAAGGATGTCATCCAGTTAACATCAGATGCAGATGGTTCTAGTGTGTCTCAGCGGGAAACTGAAGATGTTAAAGTTAAGTTTGAAACCCTACGTGCCATGGAACAGGCGGAAACTATTGACATAAACAGCCACTTGTCCGACAGAAATGTAGGTGAGGATGAACATACAATGCACACTATGATGATCACACCAGAATTACTTGGGTTAATTCCTTCATCATCGGGACAATCGGATGTGAGTAGCGACGCAGGCAAATGTGGCATTATGGGCCCCAAGACGTGGACACAGGAGGATATGGAACTTGCCTTGGATGCACTGAGAAACCACAACATGAGTCTTACTAAGGCATCTGCAACTTATGGCATTCCTCCACGACTTTGTGGCAACGAGCTCACCGCATGGGAATTGACACCCCCAAAAAGGAGGGTCCCACCAAGTCTTGGACAGAAGAAAACCTCAATAGTGCACTGGAGGCACTCAGAACTGGCTCTATATCTGCTAACAAAGCCAGCAAGGCTTATGGTATACCCAGCAGTACCCTGTACAAAATTGCACGTCGTGAAGGAATACGATGACCTTGAACGAGCTCTAGAAGCTATTCGCTCAGGACAAACATCTGTTCAGCGTGCCTCTACAGAATTTGGGATTCCTACAGGGACATTATACGGCCGTTGCAAACGAGAAGGTATTGAACTTTCTAGGAGTAATCCTACACCATGGTCAGAAGATGCAATGGGTGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAACCAAGCGGCAATTCACTACAATCTTCCGTATTCTTCCTTGTATGGCAGATTTAAAAGGGGCAAGTACGAGGCGGAGGGGCACCAGCATCCGGATGAAACGGGCCACCACTCTCCCCCGACATCGGCACCACAGGTGATGATTGTCCCTTACCAACAACATACACATCTTCCACCCCAGCAACAACCCCCACAGCAGcaaccccctccacccccacaaCACCACTCCCCTCAACAACATCCTATGTACCAGCAGCATGCCCCTCACAGCGCAAGTTGA
- Protein Sequence
- MRITLSTDLRAHGQPRKDVIQLTSDADGSSVSQRETEDVKVKFETLRAMEQAETIDINSHLSDRNVGEDEHTMHTMMITPELLGLIPSSSGQSDVSSDAGKCGIMGPKTWTQEDMELALDALRNHNMSLTKASATYGIPPRLCGNELTAWELTPPKRRVPPSLGQKKTSIVHWRHSELALYLLTKPARLMVYPAVPCTKLHVVKEYDDLERALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHQHPDETGHHSPPTSAPQVMIVPYQQHTHLPPQQQPPQQQPPPPPQHHSPQQHPMYQQHAPHSAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -