Tpod021320.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- retn
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000006.1:190709-209731[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-21 1.3e-17 65.8 0.0 4 89 65 148 61 148 0.93
Sequence Information
- Coding Sequence
- ATGACGCCTCAGACCACCCGTCCATCCGGGACGGGGTGTCGTGCAGGATCCGACCAACAGCAGCAGGTACAGCGAGCGAACATCAGAGAACCTCTCCAAGCATTACACAAGAGTGACTTGTACGGTTGTGGTCCGTATCTCGTACGGTTGATTCGCGCGCAGTCACCCAACAATGGGGCAGATAATTTGACCACTTTTATAGAAAGGGGGGAGGCGTGGATAAAACCACAAGGCACGCCGATCAACCGACTACCGATCATGGCCAAGTCTGTGTTGGACCTGTACGAGCTGTATAACCTGGTGATCGCCAGGGGAGGTCTGGTGGACGTCATCAACAAGAAGTTGTGGCAGGAGATCATCAAGGGCCTTCATCTCCCGTCATCCATTACCTCGGCAGCCTTCACGCTCAGGACACAGTACATGAAGTACCTGTACCCGTACGAGTGCGAGAAGCGACGCCTGAGCACGCCGGCAGAGCTCCAAGCGGCGATAGATGGCAACAGACGCGAGGGAAGACGCAGCAGTTACGGGACCTACTCGGACATGATCCAGCGCAGTCCCTCAGTACCTGGTCACCAGCAGGGCGGCCATGAACGGGAACtctcatcaccatcatcaccatcaccaccacccgTCGTCTCACCACCGTCACACCCCCAACCGCTGGGTCAGCCCATGGGCACAGGGCCGACCCCCGGTCTCGCAGCGTCAGAGTTTGAGAACCGCATGGCCGAGTACGTCAAGCTTATCAACAAGGAACTGCGCAGCTCCGCGGCGACACCGCCTCACCACGCCTCCCCTCCTACCTCGGCGTCCCCCCAGGAGACAGCTCTAAGCGCCCTCGAGATGTCCCGACTCACGCTCTGGAGCCTCTACAACAACAATACCCCGGTGGCCCCGCCCCCTCCCACAGCTGCGGAGCCCCAGAAGGAGGCCCTCAATCTCGAGGTGCGGGAACAGCAGGCGCGCGCCATGCAGGATGTGATGAGCAAGCGCGAGAGCGATGAATCCTTACTCCCACCACCCGCCAAGAGGCTCCTGGCCGAGGAGGACCCCGTCAAGCCCTCGTCAGGGGTTGGAGGGACACACATCAAGATCGCAAGCAGAGGCGATAGCAGAACCGGAATAGACAACTCGCTCGTGGTCAGCATGGAAATCAACGGCATGATGTACCAGGGCGTGCTGTTCGCGCAGAGCACAAGGAGTCGTATGACGTGA
- Protein Sequence
- MTPQTTRPSGTGCRAGSDQQQQVQRANIREPLQALHKSDLYGCGPYLVRLIRAQSPNNGADNLTTFIERGEAWIKPQGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSDMIQRSPSVPGHQQGGHERELSSPSSPSPPPVVSPPSHPQPLGQPMGTGPTPGLAASEFENRMAEYVKLINKELRSSAATPPHHASPPTSASPQETALSALEMSRLTLWSLYNNNTPVAPPPPTAAEPQKEALNLEVREQQARAMQDVMSKRESDESLLPPPAKRLLAEEDPVKPSSGVGGTHIKIASRGDSRTGIDNSLVVSMEINGMMYQGVLFAQSTRSRMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -