Tpod037220.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000009.1:110827336-110829959[+]
Transcription Factor Domain
- TF Family
- Nrf1
- Domain
- Nrf1_DNA-bind domain
- PFAM
- PF10491
- TF Group
- Basic Domians group
- Description
- In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human [1]. Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila [2]. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Swiss-Prot:Q8C4C0 there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00036 12 7.4 0.0 40 63 17 40 9 49 0.88 2 5 0.00021 6.7 8.2 0.0 39 63 66 90 51 104 0.83 3 5 0.00023 7.4 8.0 0.0 39 63 116 140 102 150 0.82 4 5 0.00021 7 8.1 0.0 39 63 166 190 151 201 0.82 5 5 0.00024 7.7 8.0 0.0 39 63 216 240 199 248 0.82
Sequence Information
- Coding Sequence
- ATGCTGGCTGACTGGGGGGTCTCCAGAACGTGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAGGTCAACAAGGGTGCCTTCTATGTTGTTCAGGACATGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGAACGTGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAGGTCAACAAGGGTGCCTTCTATGTTGTTCAGGACATGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGACATGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAGGTCAACAAGGGTGCCTTCTATGTTGTTCAGGACATGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGACGTGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAGGTCAACAAGGGTGCCTTCTATGTTGTTCAGGACATGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGAACGTGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAGGTCAACAAGGGTGCCTTCTATGTTGTTCAGGACGTGCTACATATCAAGGAGTAGGTTGTCGAGCACCCTCACCTTCTTTCATTACAAGGTAG
- Protein Sequence
- MLADWGVSRTCYISRSRLSSTLTFFHYKVGQQGCLLCCSGHATYQGVGCRAPSPSFITRTCYISRSRLSSTLTFFHYKVGQQGCLLCCSGHATYQGVGCRAPSPSFITRTCYISRSRLSSTLTFFHYKVGQQGCLLCCSGHATYQGVGCRAPSPSFITRTCYISRSRLSSTLTFFHYKVGQQGCLLCCSGHATYQGVGCRAPSPSFITRTCYISRSRLSSTLTFFHYKVGQQGCLLCCSGRATYQGVGCRAPSPSFITR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -