Basic Information

Insect: Timema monikensis
Gene Symbol: ci
Assembly: GCA_902151445.1
Location: CABFVZ010000071.1:874262-901205[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00035 0.073 15.6 0.4 3 23 252 275 250 275 0.94

2 5 0.19 38 7.1 0.2 2 23 284 310 283 310 0.81

3 5 0.00026 0.053 16.1 2.9 1 23 316 340 316 340 0.98

4 5 0.00084 0.17 14.4 0.3 1 23 346 371 346 371 0.96

5 5 1.1e-05 0.0022 20.4 0.3 1 23 377 402 377 402 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00035	0.073	15.6	0.4	3	23	252	275	250	275	0.94
2	5	0.19	38	7.1	0.2	2	23	284	310	283	310	0.81
3	5	0.00026	0.053	16.1	2.9	1	23	316	340	316	340	0.98
4	5	0.00084	0.17	14.4	0.3	1	23	346	371	346	371	0.96
5	5	1.1e-05	0.0022	20.4	0.3	1	23	377	402	377	402	0.97

Sequence Information

Coding Sequence: ATGTTTGTGGGATGGGTAGTAGTGTGGAGGTTGGTTCTCCCCCCTGACTACCTTACTTCCCGGGCGCTCGCCGAACTGCAGCCGCCCACCTCGACCATAGGCAGTTCCGAGTTTCCCTTCTCCATCGACGGTTCCCGGCTGACGAGTCCTCGACCCGGAAGTCTTCGACAAAGCCGGAAACGAGCCCTTTCTTCCTCGCCTTACTCAGACTCTTTAGAGATCAACTCTATGATTCGTTTCTCCCCAAACTCGCTCGTCTCCATTGTGAACGGTTCCAGGAGTTCGAGCGCCAGCGGATCCTATGGCCACCTTTCAGCAGGAGCGATCAGCCCTGCACTAAGCATGCACCCTGGCATGGCACCCCACCTCCAACAATTGCAAGCTCACCTCCTTCGGACTGCAGGAGGCATGTTACCACCTCTACCGCCTCACCAGTCTCAACCCCCTGGGGGGCTGTTCTCCCTCCCCCACCACCACATACCCTCATCAGGACATTCCATTACCAAAACAGAGTTGACCAGAGACTCGTGCAAGAAGCTGGATTCCCCCGTGTCTAGTAGTGTAGCGGAGGCTGACACTAGTGCACCAAGTAGTGGCCACCGCAAAGTGCGTATCAAGAGAGAGCCAGCAACAACCACGACGTCCGCTGCTCCGTCCCTTGTGGGTGCCGACAACAGCAGCAAGTGTTCCCCTGGTGGTGCAGACTCTGGAGATCCTCTTAAAGACGAGCCAGGGGACTTCATTGAGACCAATTGTCATTGGAGGGAGTGTGGCGTGGAGTTCTCGACTCAGGACGAGCTAGTCAAGCACATCAACAATGACCACATCCATGTGAACAAGAAGTCATTTGTGTGTCGGTGGGAGGAATGCTCAAGAGACGAGAAGCCATTCAAGGCTCAGTACATGTTGGTGGTGCACATGAGGAGGCACACCGGGGAAAAACCCCATAAGTGCACGTTTGAGGGCTGTTACAAAGCATACTCACGCCTAGAGAACCTCAAGACGCACTTACGTTCGCACACTGGTGAGAAACCATACATGTGTGAGTACCCTGGTTGCAGCAAGGCGTTCAGCAATGCGTCAGACCGGGCCAAGCACCAGAACAGAACCCACTCTAATGAGAAACCGTATGTCTGCAAGGCGCCTGGCTGCACCAAGAGGTATACAGACCCAAGTTCTCTAAGGAAACATGTCAAGACAGTTCATGGGGCAGAGTTTTATGCCAACAAGAAGCACAAGGGTGCCGGCGACGGGACAGAAGATGGACCAGGGGGTACCGGGGGTCTTTTGGACTCTAGCCCTCACAGTGAGGAGATGATGAGTGGCAAGACAGCCAGTCTTTCGAGCCCCAGCATCAAGTCTGAGGAGGCCAACTCTCCTGGGCAGCAAGGTAGCCCCATGAGTGGGACTCAACATAGCTCTGCGGGTATGGATGACCCTGTTAGTGATTGCAACATCAGCACCAGCAACCAAAACCACTCCTCACTCCCCGGACTGGTCGACACAGATGACTGGGTGGATGAAAGGGAGGAGATAGAGCTGCCTGATCTCCCTGTGGCTTTGAGAGCAGTGGTGGGAACAGGAGGAGATCAACCTAACAATCTACCTGTGACAGACAGGAATAACAGGAACAGACTCAAAACTAGGCTGCAGGCAAAAGGCATTTCAACGTTACCTCCACTACCGAACATTACAGGTGTACGTAGAGGACTCCTACCCCCGAACCTTGGTGACCTGAATCGACGCATCACAGATCTCAAGATGGAGGGCTCGAAACTTTCCCCAACATCTCAGACTCAGACCCAACTTATTGACCTTCAGTTGAGGTTGGCCCCACCAGGACTGGTAGCACAACAACCCAACTCGCGCAGGGATAGCAACTCAACAGTCAGCACATATTATGGCAGTATGAAGTCGGGAGAGATGGGTTCCAGCCGTAGGAGTAGTCAGGCCAGTCAGGCGTCGGCGTGTGTTCGTCCTGGCAGTGGCCGTGTGACCTCGTTTTACGACCCCATCTCCCCGGGTAGTTCCAGACGCTCCAGTCAGCTGAGTAGTTCAGGAGTACCTGCGACCGGCAGTGGTACTGGTAACCATCTCCTAACTTCTGGGATGACCAACCACCTGTATCGGTTGCACAGCAGAGCTTTGGGACAACATGATAACATCTACTCTACCTCTAACCTTGTGCTGCAGACCCAAAACATGTCACTGCAACAGACTGGAGTTGGATATCCCGCACCTCCTAGTGGCAGCCCGGTTGACAACCGACGCATGTCTGAGCCATGTAGAGCAGCAGAGCGTGCCACACCCTCCCCACGACCTCACAGTGTAGTGCTGCCCCCTATAGTGGCTCGTCAGGGTCCAGGCAGTGAACACCATCCCAACCAGGAGGTGGTGTTGGATGAGGTGGCTGAGGGAGAGATGGTGGAGAACAAGCTGGTCATCCCAGATGAAATGATGCACTACTTGAGTCAGgtGGCAGATCATATTAAGGATGAATCTAGCAATAAATCAACCACAAATGTCAACAATAACGGCAACAGTAACAACTTCCACCCTGCCTGTAACTATCCTCAAGGGGCATATAACACCTACAATGGAAGACAAGTATTGGGAAGTGGAGTAGCTAGTTCAAATTCATCAGTTCCACCAACACCTTCTGGGAACTACAGTAATGCCAATTACAACCCCAATCCTATCAACAATTGTCATTCTCAGGCTGGTCCTGTACACACTAGCTTCAGTGGACAATCACTTTCTGCAAGTCCAGTTCCTGCCAATGCTCTTTATTGCCATGGTGCTCATTTACAAAATAGCTCGACTCGGGGTTCCACAAATGGTTTGATGGGACAGTCTATGCCTCAAAATAGTGGCAGTTATAATAATCAACAAATGCCAATGATGAACAATCCAAACCATTGCCAGAATATAAGTAATCCTATTCAGTGCCAAGGTCAAACTAACATGGGATATAGCGGTCCTAACATGCCAATGAACAATTCAATGCCATGCCAGTCCATGTCAAGCAATGTGCAAGCTAATACAGGCTATAATATGAACCAGATTCCTATTATGAACAGCCCGCAATGTCAAGCTATGGTTAACAGCCCACCACAATATCAACCCATGCCGAGTCCAGCTCATTCCAATTATAATGGGCCTCCCACACCAATGTCCAACACTTCTGGACAGTGCCAGTCCATGCCAAGCCCGGCGCAAGCCAACACTGGATTCATTGGGCCTTCTATGCCTCTGGGTAACAGCCCTCAGTGCCAATCCATGCCAAGCCCAGCCCAAGGAAACGTTGGCTTTGTTGGGCCTAATATGCCCACCAGCCCTGCGGCGAATGGCTACGGTGGAAATCGGGGACAGTCCCCTCAATTAAGTCAACAACCATTAACAAGTCCTGCAGCTGGAGCACCAGCACCCCCTCAGACAAACAACAGTTGGCAACAGAATGTTCAGGGCATTCAGGCTGCACAAATGAGCAGAGGATATTCCAGTGCTAGCATGACTCACCCCAACCAACATAGCATCAATACACAGCATCAGAGCCCCAACTACAACCCACAGCAGTATGGAAACTGCTACCAGCAACATACCCACAGTCAGCACCGATGTAGCAACTTTCCACAGCAGCAACAAGTTACACCTTGCTCTAACTGTAGGTGTCAACAGCAACATGGCAACAGCTGTTGTGGATCAAGTTGGGTCGATTACAGTAATATGCCTCAACAGATGCCTCCTCCGCCGTATCAACAACGATCACATCATTTTATGATCTCAAACTTGTCATCTTGTTCTACACAACAGCCACTTCTGTGCAATAACCAGACCAATCAGATGGGTCCTCCAGGGGTCGGGAATGCTCCCATCAGGCCAACAACAAACATGAGCCACAATCATACTCACAATGTGTCTGCGTATCCAGGTGGGGGGAACATGACTGAAATACAGTGTCGAGATATCAGTCAGTCTTCCACTAACTCGAACAATCCCAACGCTAGGGGGATGAGACCAGATAATGTTAGTGTGAGGGGAATGAGGCAAGATGCCTACCAAAGGACTTTAGAATATGTGCAGCAATGTCAATCATGGGCAAGCTGTGATAATGTGTCGAGCACAACACAGCGTAACACAATGGGCAGAAGAGAGGTGGTAAACAATACTGTAGCCGAAAGTGCGAGTAAGGACCTTTTACAAAACTCTACCTCAAACATGGTTATAAACGACATGACATCTTCTCTTACTTCTTTGCTGGAGGAAAATCGTTACCTGCAAATGATTCAATGA
Protein Sequence: MFVGWVVVWRLVLPPDYLTSRALAELQPPTSTIGSSEFPFSIDGSRLTSPRPGSLRQSRKRALSSSPYSDSLEINSMIRFSPNSLVSIVNGSRSSSASGSYGHLSAGAISPALSMHPGMAPHLQQLQAHLLRTAGGMLPPLPPHQSQPPGGLFSLPHHHIPSSGHSITKTELTRDSCKKLDSPVSSSVAEADTSAPSSGHRKVRIKREPATTTTSAAPSLVGADNSSKCSPGGADSGDPLKDEPGDFIETNCHWRECGVEFSTQDELVKHINNDHIHVNKKSFVCRWEECSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCYKAYSRLENLKTHLRSHTGEKPYMCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGAGDGTEDGPGGTGGLLDSSPHSEEMMSGKTASLSSPSIKSEEANSPGQQGSPMSGTQHSSAGMDDPVSDCNISTSNQNHSSLPGLVDTDDWVDEREEIELPDLPVALRAVVGTGGDQPNNLPVTDRNNRNRLKTRLQAKGISTLPPLPNITGVRRGLLPPNLGDLNRRITDLKMEGSKLSPTSQTQTQLIDLQLRLAPPGLVAQQPNSRRDSNSTVSTYYGSMKSGEMGSSRRSSQASQASACVRPGSGRVTSFYDPISPGSSRRSSQLSSSGVPATGSGTGNHLLTSGMTNHLYRLHSRALGQHDNIYSTSNLVLQTQNMSLQQTGVGYPAPPSGSPVDNRRMSEPCRAAERATPSPRPHSVVLPPIVARQGPGSEHHPNQEVVLDEVAEGEMVENKLVIPDEMMHYLSQVADHIKDESSNKSTTNVNNNGNSNNFHPACNYPQGAYNTYNGRQVLGSGVASSNSSVPPTPSGNYSNANYNPNPINNCHSQAGPVHTSFSGQSLSASPVPANALYCHGAHLQNSSTRGSTNGLMGQSMPQNSGSYNNQQMPMMNNPNHCQNISNPIQCQGQTNMGYSGPNMPMNNSMPCQSMSSNVQANTGYNMNQIPIMNSPQCQAMVNSPPQYQPMPSPAHSNYNGPPTPMSNTSGQCQSMPSPAQANTGFIGPSMPLGNSPQCQSMPSPAQGNVGFVGPNMPTSPAANGYGGNRGQSPQLSQQPLTSPAAGAPAPPQTNNSWQQNVQGIQAAQMSRGYSSASMTHPNQHSINTQHQSPNYNPQQYGNCYQQHTHSQHRCSNFPQQQQVTPCSNCRCQQQHGNSCCGSSWVDYSNMPQQMPPPPYQQRSHHFMISNLSSCSTQQPLLCNNQTNQMGPPGVGNAPIRPTTNMSHNHTHNVSAYPGGGNMTEIQCRDISQSSTNSNNPNARGMRPDNVSVRGMRQDAYQRTLEYVQQCQSWASCDNVSSTTQRNTMGRREVVNNTVAESASKDLLQNSTSNMVINDMTSSLTSLLEENRYLQMIQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01451003;
90% Identity: iTF_01451003;
80% Identity: -