Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010001375.1:166918-179631[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.9 4e+02 3.9 0.2 2 11 325 334 325 339 0.83

2 6 9.2e-07 0.00019 23.8 2.4 1 23 361 383 361 383 0.97

3 6 4.8e-06 0.00099 21.5 0.9 1 23 389 411 389 411 0.95

4 6 5.7e-07 0.00012 24.4 4.8 1 23 417 439 417 439 0.96

5 6 0.00029 0.061 15.9 1.8 1 23 445 467 445 467 0.96

6 6 3.2e-05 0.0065 18.9 2.5 1 23 485 507 485 507 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.9	4e+02	3.9	0.2	2	11	325	334	325	339	0.83
2	6	9.2e-07	0.00019	23.8	2.4	1	23	361	383	361	383	0.97
3	6	4.8e-06	0.00099	21.5	0.9	1	23	389	411	389	411	0.95
4	6	5.7e-07	0.00012	24.4	4.8	1	23	417	439	417	439	0.96
5	6	0.00029	0.061	15.9	1.8	1	23	445	467	445	467	0.96
6	6	3.2e-05	0.0065	18.9	2.5	1	23	485	507	485	507	0.98

Sequence Information

Coding Sequence: ATGGCGGGCTATAGGAGAGTTAACTATTACGAACTGTGTCGTTTGTGCACGTCTAGTGAAGGAACCAAGATGCACATCTTCCGAGAGGAAGGTCGACGAAGACAACTCCCCACGAAAATACAGATCTGCCTCCCCGTTCAGGTGTGTGAAGATGACTCACTCCCCAAGATCATCTGTAGTCACTGTGTGGACAAGCTGGAGAGCTTCTATGACTTCAGAGAGTCTTGTGTGAACGCAGAGGCCATGCTAGAGAGCTACTTCACCTCACTGCGTTACTCAGACGACTTCACGAGGGAGGGCAAGgTGTATGTCAAGGACGAAAGCCCCCCCAAGAAGAAGGGCAATGAAGGGGCGGAGTCCCCAGGTAAACAGCAACAGCAGCACCATCAACAAATGCAGAAAGCAGCAGTTGTGGCAGCAACTGATGGCCTCAACAGCTTGGTGCAGGCCGCCGGTATACAGATTGTGAGTGACGCCGACGGCACTAGAGTGCAGCAGTACAAGTGCGCCATGCAGATGCAGCCTGGCCCAGGAGGGCCAACTGTGGTTGAGGCAGCCACTGCAGAGGCCCGCTACAGTTACGAGGCATGCAGTGCAGCCAACAGCCAACAACAGGCTGCTAATATTGCCAACAGTCAACAGGTGCAGGCCAAGGTGGAGGATGGCAGTACGCAGTGCAGTGAGACAGATTTCAACAACAAGTCTCCCTGTAGCAGCGAAGATGGCGGAGAACTGATAGTCCCGCACACACAGCAGCAGACTGTAGCCTTCACATCCACCGGTCCTGGACAGGAAATGTTGGTCCACTTCAACTTCAACAATAAAGATAGAGACGGCTTCCTTCGCACCGAGGATCACGCCGCTTTGCAGAGATCGTCCATAGCCCAGATCGGCGAGTTCCTGCGCATGAAGACGGTGAATCTGGTGGATACAGGCGCACCACCTACGGCAGTGGTGGAGGTGGCCCAGCCCACCTGCGAGCGCTGCGGGAAGGAGTTTGAAGAGCTAGAGGCGCATGACTGCAACCAGGACAACtcggggggaggggaagggacCGACAAGAACGGGGGAGCTGGGAACTTTGCCTGTGAGATCTGCGGGAAACCTTTCAAGCGTAAAGAGCATCTGTTCCAGCATCGCAAGCTGCACACCGGAGAGCGTCCGTACGTGTGCTCCGTCTGCTCCAAGGCGTTCAGCCGCAAGGAGCATCTGGTGCGCCACGCCGTCTCCCACACCGGCCAAAAGATGCACGCGTGCGAAATGTGCGGCAAGGCGTTCAGTCGCAAAGACAACCTGCACAAACACCGCAAGACACACGGCGTCGCTGGGCCGTATGTTTGCGAGACGTGCGGCAAGAGCTTTGTTGTGAAACACTACTACATGATGCACCGGGGCTCCCACACCAGCGGTGGCGATGGCGGTGCGGACGCCGGTGATGAGGATCCTCTACCGTACAAGTGTGACATTTGCAACAAGGGCTTTACTATGAAGCAGTATTTGACCACACACAAACTGCGCCACCGGAACAAGGCCAACCAGCAGCAACAGAGCGTTGCGATGCAGGGGGACCCTGCTGCGCCGGCGGTGACCGAGGTTCACCAGGTGACCCTAGCGCCGCACAACGTTGCCCCTCTCACAACCATCAACAACGCAGCGCTGTTAACCTCCAACATTCTCCACCATGTCCCCAACAACACGGCGGCTATGATCCAAGTCTCCTCCACGTCCACGCCTACTGCGTTCCTCTGCGCGCCAGGGACAGTTTCTGCCAATGAGGTACTCGAGTCATACAGGCGGCTCCACTCGGCTTGA
Protein Sequence: MAGYRRVNYYELCRLCTSSEGTKMHIFREEGRRRQLPTKIQICLPVQVCEDDSLPKIICSHCVDKLESFYDFRESCVNAEAMLESYFTSLRYSDDFTREGKVYVKDESPPKKKGNEGAESPGKQQQQHHQQMQKAAVVAATDGLNSLVQAAGIQIVSDADGTRVQQYKCAMQMQPGPGGPTVVEAATAEARYSYEACSAANSQQQAANIANSQQVQAKVEDGSTQCSETDFNNKSPCSSEDGGELIVPHTQQQTVAFTSTGPGQEMLVHFNFNNKDRDGFLRTEDHAALQRSSIAQIGEFLRMKTVNLVDTGAPPTAVVEVAQPTCERCGKEFEELEAHDCNQDNSGGGEGTDKNGGAGNFACEICGKPFKRKEHLFQHRKLHTGERPYVCSVCSKAFSRKEHLVRHAVSHTGQKMHACEMCGKAFSRKDNLHKHRKTHGVAGPYVCETCGKSFVVKHYYMMHRGSHTSGGDGGADAGDEDPLPYKCDICNKGFTMKQYLTTHKLRHRNKANQQQQSVAMQGDPAAPAVTEVHQVTLAPHNVAPLTTINNAALLTSNILHHVPNNTAAMIQVSSTSTPTAFLCAPGTVSANEVLESYRRLHSA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445978;
90% Identity: iTF_01450054;
80% Identity: -