Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000098.1:509409-532467[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0051 1.1 12.0 6.2 1 23 264 286 264 286 0.97

2 9 0.00067 0.14 14.8 2.8 1 23 293 315 293 315 0.98

3 9 0.11 22 7.8 5.0 1 23 320 343 320 343 0.95

4 9 0.025 5.1 9.8 4.9 2 23 357 378 356 379 0.94

5 9 0.014 2.8 10.6 2.7 1 23 387 410 387 410 0.96

6 9 8.5e-06 0.0017 20.7 5.3 1 23 416 439 416 439 0.94

7 9 1.9e-06 0.0004 22.7 0.4 1 23 444 466 444 466 0.98

8 9 0.032 6.5 9.5 0.8 1 23 472 495 472 495 0.90

9 9 4.3e-05 0.0089 18.5 3.9 1 23 501 523 501 523 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0051	1.1	12.0	6.2	1	23	264	286	264	286	0.97
2	9	0.00067	0.14	14.8	2.8	1	23	293	315	293	315	0.98
3	9	0.11	22	7.8	5.0	1	23	320	343	320	343	0.95
4	9	0.025	5.1	9.8	4.9	2	23	357	378	356	379	0.94
5	9	0.014	2.8	10.6	2.7	1	23	387	410	387	410	0.96
6	9	8.5e-06	0.0017	20.7	5.3	1	23	416	439	416	439	0.94
7	9	1.9e-06	0.0004	22.7	0.4	1	23	444	466	444	466	0.98
8	9	0.032	6.5	9.5	0.8	1	23	472	495	472	495	0.90
9	9	4.3e-05	0.0089	18.5	3.9	1	23	501	523	501	523	0.98

Sequence Information

Coding Sequence: ATGAACCAGATTATTAGTGCAGATGACTCAGCAGATATGGCAGCTGTGCAAATGTTTGGTGAGGTGATAGGGACTGAAGAAGCTCCTCTCACGTGTGATGGGAAGAAGcttCTTTTGGTTCAGTGTTTGGCAAAAGCCAAAGGCACAAGTGTAACTCAAGATGACAAATCTTTGTCCAGTATTGAAGACATTTATtctgaaactaaaaatatgcACACCTCACCTACCAAACGTCCTGCATCTAAAGTATTATGCTACTTCAGACAAAAGTACCTGAACCATAAACAACAGAGGCAGCGTATGATACATAAGAACCTTTCAAACATCAAGCACCACACAGAAACATCAAAGgttttgGATGATTGCGGAGCAATGACTAAGGATTTAGCCCAAGATTACAAACCTATGCAAGAAAGTGAAGTTTATGTTGACATTGCATTAAGTGGTCCTGTCCCATCCTCTGCCCAGTTACTGTCAACGCAGGGTATTGCACCGGTCCTACAGGAGGGTGACAATAGTCTCGGAAAATTGCTCCTGGATAATTCATCCTTGCCAAGAAATTTGAGTTCTAATGAAACACTGTGCAAGTCAATTGCCAATACGTTGGAGGACCATGATGAAATTAACAATGGCAAAGAAAATATCCATCAATTTTCGGTCTTACCCCGACGGAAACCATTTTTAGATGTATCTGATGGAGTTTctgaaaacattcaaaattgtttatcttCTAAATCATTGAATatgaaagaaaagaagaaaaactaTGAGAAACTTGCACCGTACAAGTATTTTTGTCCTAATTGCTCATTCAAAACCAAACGGGAAAGTCACTACAAGCGGCACCAAAAACTTCACAAGCAGATTTCCCAAGTGTTCTCCTGTGACATATGCAATTTTACATGTATACGACAAGGTGTTTTACGTCGTCACAAGATGACACACAATGCTGTCGATTTTGCTTGTGACAAGTGTAATTATCGTACCgaccattacaaatatttgttgaagCATAAGCGCCTCAAGCATTGGAATAACAACAAGGTAAATTcagaaaagaaaactttgagTTGCAATGATTGTGAATATAGTACAACTAAACTTCACTTGATGGAAAGACATAAGCGTAGCCATCATAACACCAAACGGGACATGGACTTTCAATGTCAGCAGtgCTCGTATAAGGCTATTCGTAAAGAGCATTTCATGAGGCATGTAAATAATGTACACAATGACAAAAGGCCATACTTATGCGACCATTGTGGCAAGTCATTTAAGCGCTCAGACGCCCTGAAACACCACACTTTTACCACCCATGGTTTGAGCGCCTATCAGTGCCAAGTGTGCAGTAAGATTTTCCGTACTCAAGCCCAACTCAACACACATTTGGCAGTTCACTCTAATATCCGTGCCTTCTTGTGTGAGGTGTGTGGTTCTTCATTCAAGACGAGAGCTGCTCAGTATAAACATGTTCTCCATATTCACAAGAACCCGAAGGCATATTCATGTACACAGTGTTCAAGGAAGTTCAATACAAACTATGCTTTGAGGCGCCACACAAAACAACACAGCTTGGACAATAAAACCAACTGTATGCAGCTCTTGGAAGAGACATCTGGTGTTTTTTGTGAAAACCCAATAATAGATATGGATGCAACTGCTTCTTTGGGGATGCACATCGGCTCAGACAGTCATATGCCGCCTCTTACAGCCAATACTCTTTTGATTCAAGATTCCTTACAGCTTACCCTTAATGATAACCAAACTGCTATTGCTGTACAAGTGATTGGAGTGATTTAA
Protein Sequence: MNQIISADDSADMAAVQMFGEVIGTEEAPLTCDGKKLLLVQCLAKAKGTSVTQDDKSLSSIEDIYSETKNMHTSPTKRPASKVLCYFRQKYLNHKQQRQRMIHKNLSNIKHHTETSKVLDDCGAMTKDLAQDYKPMQESEVYVDIALSGPVPSSAQLLSTQGIAPVLQEGDNSLGKLLLDNSSLPRNLSSNETLCKSIANTLEDHDEINNGKENIHQFSVLPRRKPFLDVSDGVSENIQNCLSSKSLNMKEKKKNYEKLAPYKYFCPNCSFKTKRESHYKRHQKLHKQISQVFSCDICNFTCIRQGVLRRHKMTHNAVDFACDKCNYRTDHYKYLLKHKRLKHWNNNKVNSEKKTLSCNDCEYSTTKLHLMERHKRSHHNTKRDMDFQCQQCSYKAIRKEHFMRHVNNVHNDKRPYLCDHCGKSFKRSDALKHHTFTTHGLSAYQCQVCSKIFRTQAQLNTHLAVHSNIRAFLCEVCGSSFKTRAAQYKHVLHIHKNPKAYSCTQCSRKFNTNYALRRHTKQHSLDNKTNCMQLLEETSGVFCENPIIDMDATASLGMHIGSDSHMPPLTANTLLIQDSLQLTLNDNQTAIAVQVIGVI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445148;
90% Identity: iTF_01445148;
80% Identity: -