Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000357.1:124208-125230[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.072 15 8.4 3.1 1 23 77 100 77 100 0.94

2 9 0.0015 0.32 13.6 1.8 1 23 106 129 106 129 0.94

3 9 3e-05 0.0062 19.0 0.4 1 23 136 159 136 159 0.95

4 9 0.098 20 8.0 4.6 1 23 167 190 167 190 0.91

5 9 1.4 2.9e+02 4.3 0.9 3 14 199 207 198 216 0.75

6 9 0.0021 0.44 13.2 0.1 1 23 221 243 221 243 0.98

7 9 1.9e-07 3.9e-05 25.9 0.4 2 23 250 271 249 271 0.97

8 9 0.00031 0.063 15.8 2.6 2 23 278 299 277 299 0.96

9 9 6.1e-05 0.013 18.0 0.5 1 23 305 327 305 327 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.072	15	8.4	3.1	1	23	77	100	77	100	0.94
2	9	0.0015	0.32	13.6	1.8	1	23	106	129	106	129	0.94
3	9	3e-05	0.0062	19.0	0.4	1	23	136	159	136	159	0.95
4	9	0.098	20	8.0	4.6	1	23	167	190	167	190	0.91
5	9	1.4	2.9e+02	4.3	0.9	3	14	199	207	198	216	0.75
6	9	0.0021	0.44	13.2	0.1	1	23	221	243	221	243	0.98
7	9	1.9e-07	3.9e-05	25.9	0.4	2	23	250	271	249	271	0.97
8	9	0.00031	0.063	15.8	2.6	2	23	278	299	277	299	0.96
9	9	6.1e-05	0.013	18.0	0.5	1	23	305	327	305	327	0.97

Sequence Information

Coding Sequence: ATGTGCACTGCCATTATAAATGACAAAGCAGTTGATATGAAGAATGAAAATACAGATAATACAGAAGTTGAAAGGATAGGGGATACAATTACACTAGAAGAGTCCTGTGATGGGATAAATTCTCAAGACGACCCTCTTGTATTAGGCCTTATTAATGATAAGATGCATTTTCAGTCTTCAAGCGGCCACAATTTTGAAACTCCTTCAAAAATTCCTCTTAAGAAACACTACATTTGTTCCAATTGTCCCGAGAAATTTCTATTTCCGTCTTTGTTGAAGAAGCATTGCAGATCTTTTCACAACAGCCCAGCGACGTTCCTCTGCTCGGAGTGTAATAAGATGTGTCCATCTCTGAAACAACTCTGGGAACATAAACGCCAGGAacacacaaaagaaaaaaaagagtatttatgTAACTGGTGTGAAGAGTCTTTCACAGATAATCTTAGCTTAAAGAAGCACCTTCAGAGTATCCACTCTAAAAAGAGATCCCAAGGCTATCTTTGCAATTGTTGTGGCAAGTCTTTTTCATGCAGCGGTAACTTCAAACAACATGTAATTAAAGTTCACTCTAAAAATCCGCCTCGGGAACTTTGTAACATTTGTGGGAAAACTGTGTCTTGCCTCAAAGTTCACCTTCCTATCCATTCCGAGGAGTATTACGAGTGTGCGGAGTGTGGCCAACGTCTCAAATGGAGGAGCAGTTTAATCACTCATCTTCAAGTCCACAGTTCTGAAAGAGCACTTCCATGCACGGTCTGCGACAAGGCGTTCAAAGATAAGGTAAAACTGTTGCAACACATGCGCACCCATACTGGTGAAACACCTTGGGTGTGTGAACATTGTGGGCGTTCTTTCAACAGAAAGTGGAACCATATTCAACACGTTCGCCTGCACACTGGCGTTAAACCCTATGTGTGTGCAGTTTGTGGTGAAGCGTTCAGACACAACGTGACAATGAAGAAACATGCAGAGAAACATAAGGCACCTTCAGACattcaagaaaataattcatttgGTTAA
Protein Sequence: MCTAIINDKAVDMKNENTDNTEVERIGDTITLEESCDGINSQDDPLVLGLINDKMHFQSSSGHNFETPSKIPLKKHYICSNCPEKFLFPSLLKKHCRSFHNSPATFLCSECNKMCPSLKQLWEHKRQEHTKEKKEYLCNWCEESFTDNLSLKKHLQSIHSKKRSQGYLCNCCGKSFSCSGNFKQHVIKVHSKNPPRELCNICGKTVSCLKVHLPIHSEEYYECAECGQRLKWRSSLITHLQVHSSERALPCTVCDKAFKDKVKLLQHMRTHTGETPWVCEHCGRSFNRKWNHIQHVRLHTGVKPYVCAVCGEAFRHNVTMKKHAEKHKAPSDIQENNSFG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01448925;
90% Identity: iTF_01450922;
80% Identity: -