Tmon021011.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000798.1:203741-228859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0013 0.28 13.8 0.6 1 23 295 317 295 317 0.98 2 15 0.23 47 6.8 1.1 1 19 321 339 321 341 0.92 3 15 0.12 25 7.7 2.5 2 23 350 371 349 371 0.95 4 15 0.16 32 7.3 0.7 2 21 376 395 375 400 0.91 5 15 0.0017 0.36 13.5 0.3 3 23 407 427 406 427 0.98 6 15 0.0046 0.96 12.1 2.3 3 23 467 487 466 487 0.97 7 15 0.063 13 8.5 1.9 2 20 492 510 491 511 0.91 8 15 0.046 9.5 9.0 0.7 2 23 517 537 516 537 0.96 9 15 0.58 1.2e+02 5.5 0.7 1 17 542 558 542 559 0.89 10 15 0.0025 0.52 13.0 5.1 2 23 588 609 587 609 0.95 11 15 0.00014 0.029 16.9 1.9 1 23 614 636 614 636 0.97 12 15 5.6e-05 0.011 18.2 0.5 1 23 641 663 641 663 0.96 13 15 1.7e-05 0.0036 19.7 0.3 1 23 669 691 669 691 0.97 14 15 0.00028 0.057 16.0 0.8 2 23 700 721 699 721 0.95 15 15 0.12 25 7.7 1.5 1 11 727 737 727 739 0.92
Sequence Information
- Coding Sequence
- ATGGCGGTAATGTTGAAGCACAAGGTGGATTGCCATAGACTTACCTTGAAACGACCGCACCTAATGGAAGTGCTACAAGGTACCCAAGACCCTGAGGGGCCACGTCCTACCTCCTATACAAACCAAGACACCTGTCAGGCCCTGTTCCCTGTCCCTGAACAGGAACAGATGTTTCAGAATCAGTCCTTGAGCAGTCTGCTACAAGAAGGCCACAACGAAGCCCTCAAGTCACTCCTAGACCAATACCAAGTCCCTACTCAGAGAGAAATGCAATTCTCTGAGAAGACACTGCCAGGTGACCCCAAGGAACCTTTTTGCTCACCAGGTTTCATACCTGACCTTGTAGATGCCGCCAACATGGATGCTGTTATGGAGAAGAGCTTCAACCCCTCAGAGTCGAGCAACATTCTCACTAATTTTGATCCCCGGAACGAGCCATCTCTAGGGGGATTGATTGGAACAGGCTCCAAGAGTGAGTGCACGAATAGTACATCTGACGTACATGTGATGATAATGTTGGATCAAGCCAAGTGTGATGAGGTGTACGGTCTTAGTGGTGGCAGGGACCGTGGAGATTGTGGGTTGTCGTACAAGATGGAGGGCTCGGGAGACAGTCGAGACGAACTCAGGACTCCGGTGGGCTTTGGTCTGATTGACGGTTCTGACAGTGCAAGCTGTGATAAGACCAGTAACAAGCTGGATCTGAACGGGGGCCAGGACGCTCTCCTGTCCCTGGTGCCACACAAGGGCTTTAGCATTGGGAGTGATGCAGTAGACAAGACACAGGCTTTAAGTGTGGCTTTGATGGACGCTGTGGACGGAATCAATCAACAGGCAGGCAATGGTACTCCGGGGGAACAGGTATCTGACAAGGGACCTCCCTTCATCTGTGACATCTGTGACAAGGAGTTTCTAAGGGTGATCTATCTGTACAGACACCTGCGAAAACACACGGGAGAGTTCACCTGCATCACCTGTAAGATGGTGTTTGCACGCAAGGAGTCGCTGCTGACCCATTCTTGTTTCTCTAAGGACCTTCCCCCCTTGACCTGTCCCCATTGTTTCAAGACCTTTCTGATCATGAAGCTGCTCAAGAAACACCTCGCTAAACACACCGGCAAATGGACATGTAAAGCATGCAAACGCATCTATAGCTCCAAGCCGGCATTGGCCCAACACAAGTGTTCGCAAGCGCCACACGCCAACAAACTCGCTCTGTGCCCGGTGTGCAACAAAGCATTCCAGAAAATCCTGTGGCTACAGAAACACCTACGCCTTCATGCCGAAACTGTTCCCTGTGACACCTGTGGGAAAAAGGTCTGCCTGGGACCAGAGACAGACACTCATAGCGCTTACTGTGTGCAGGGCAAGCTGCTGGAAGCCATTGGTCAGGCTTGCTGCCCTATATGCAAGATCACCTTCTCAGAGCTGGAGGCATACAGGCGACATGTCCACATGCACACCCACCCATTGAAATGTGAGGAATGCGGCCAGCGCTTCAAATTCAACAAGGGTCGCAGGCTTCATATTTGCCCCGGAGAACCTTGGACATGCGACATGTGTTCTGAGTCCTGCACGCTTGCCAACCTCACCCTCCACCAGGCAAGCCACGGCATTCCACCTCATCACTGCTACGAGTGTGGCCGAGACTACTACCAACAGGAAAACTACCTGAAGTGCTGTGTGGGCCCCCCGAGGAAGGTCAGGATCAAGGAGACCAACAACAACAAGGATACAGCTTCCACGAAATCTGAGAGCTGTGTTTGTCACGTGTGTGGAGAGCTGTTCAAGACCACATCGAGTCTCAGGCTACACATATCCCATCATAAGGAGCAGCAGTACTCATGCGAGATATGTCCTAAACGCTTTTATCGTAAGGATGTCCTGCAGGAACACCACTTTGTACATCAGGAGCCCAAGTTCCCCTGCACAATATGCAACAAGATGCTCAAGTCAAGCAAGTCGCTCAACACTCACATGGTGTGGCACTTGGGCAAGAAGCGTTACTCATGCTCTGAATGTGGACGGGAATTCTTCCAGAAAGGCAATTTGTTGAACCATGCTGAAATGCACAAGGACGGCCACAGAGCTTTGCTCGAGTGTACTTTCTGCAGCAAGAGTTTCATCAACAAGAATGGGTTTGCACGCCACCAACTGGAGCACACTCAAGCGCACATCTACAAGTGCACACACTGCAGCAAGTCCTTTATCAAGGTCAATATCAAGTTCATAGAATAA
- Protein Sequence
- MAVMLKHKVDCHRLTLKRPHLMEVLQGTQDPEGPRPTSYTNQDTCQALFPVPEQEQMFQNQSLSSLLQEGHNEALKSLLDQYQVPTQREMQFSEKTLPGDPKEPFCSPGFIPDLVDAANMDAVMEKSFNPSESSNILTNFDPRNEPSLGGLIGTGSKSECTNSTSDVHVMIMLDQAKCDEVYGLSGGRDRGDCGLSYKMEGSGDSRDELRTPVGFGLIDGSDSASCDKTSNKLDLNGGQDALLSLVPHKGFSIGSDAVDKTQALSVALMDAVDGINQQAGNGTPGEQVSDKGPPFICDICDKEFLRVIYLYRHLRKHTGEFTCITCKMVFARKESLLTHSCFSKDLPPLTCPHCFKTFLIMKLLKKHLAKHTGKWTCKACKRIYSSKPALAQHKCSQAPHANKLALCPVCNKAFQKILWLQKHLRLHAETVPCDTCGKKVCLGPETDTHSAYCVQGKLLEAIGQACCPICKITFSELEAYRRHVHMHTHPLKCEECGQRFKFNKGRRLHICPGEPWTCDMCSESCTLANLTLHQASHGIPPHHCYECGRDYYQQENYLKCCVGPPRKVRIKETNNNKDTASTKSESCVCHVCGELFKTTSSLRLHISHHKEQQYSCEICPKRFYRKDVLQEHHFVHQEPKFPCTICNKMLKSSKSLNTHMVWHLGKKRYSCSECGREFFQKGNLLNHAEMHKDGHRALLECTFCSKSFINKNGFARHQLEHTQAHIYKCTHCSKSFIKVNIKFIE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -