Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000246.1:527788-545753[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00044 0.09 15.3 3.1 2 23 490 512 489 512 0.96

2 8 0.0044 0.91 12.2 4.8 1 23 517 539 517 539 0.98

3 8 0.00028 0.059 15.9 2.9 1 23 554 577 554 577 0.91

4 8 6.2e-05 0.013 18.0 2.0 1 23 583 605 583 605 0.99

5 8 1.1e-05 0.0023 20.4 4.1 1 23 611 633 611 633 0.95

6 8 9.6e-06 0.002 20.6 1.2 2 23 643 664 642 664 0.97

7 8 5e-05 0.01 18.3 0.4 1 23 670 692 670 692 0.93

8 8 2.7e-06 0.00055 22.3 0.7 1 23 698 720 698 720 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00044	0.09	15.3	3.1	2	23	490	512	489	512	0.96
2	8	0.0044	0.91	12.2	4.8	1	23	517	539	517	539	0.98
3	8	0.00028	0.059	15.9	2.9	1	23	554	577	554	577	0.91
4	8	6.2e-05	0.013	18.0	2.0	1	23	583	605	583	605	0.99
5	8	1.1e-05	0.0023	20.4	4.1	1	23	611	633	611	633	0.95
6	8	9.6e-06	0.002	20.6	1.2	2	23	643	664	642	664	0.97
7	8	5e-05	0.01	18.3	0.4	1	23	670	692	670	692	0.93
8	8	2.7e-06	0.00055	22.3	0.7	1	23	698	720	698	720	0.99

Sequence Information

Coding Sequence: ATGGGATTCGTTCTAAAGCAGAGTGCGAGGCCGTCTTTATTTAACCACGACATGACTCAGTTTAATTCCCAAATAGACGAAGAAAGAGGAATAAGTGTACACCCACATGTTGCAACGGTCCACTATGGCTCATTGGAAGATGGTGTCAACGTCATCACTTTCCAAGTAGAGATGGATAAACGAGGCGAAACAGAAAGgATGCACTTGGACAGGCAAGTGGTAAACTGTTTCAAAACCATGCAGGGGAGTGGTGAGATGATGGAACCATACAATATTGTGGTGGAGGAGGTCCAGACAATGCAGGTGTTGAATGAATGGGCCGCCGATGTGGAGCAACCTGCAACCAGCAAAACGGTTCACATGATTGATTTGCCAGTGTGCACAACTGAGGATCATGATGATGGCGGTAATCTCCATAGGATTGAGGGTGTAGGCACAGTGATGCGGCCTGCTGACATGTCAATGCATGTGATGGAGTTCCCGGTGTGCAGGATGGACCTAATGTGTCGGGTGTGTGCAGAGGAGTGCCACAACTTAGTACCTGTGTTTGGGGAGCAAGGGGTTGCCATGGACCTTCCCAAGAAAATCACTTGGTACCTCCCCATACAGGTGAAACAAGAGGACCAGCTGCCCCTAAAGCTGTGCTCGCTGTGCATCGCTAAGTTGAATTCCTGCCACGAGTTGGTCAACATGTGTGTTGCTGCCGATGCCAAGCTTAGGCGCTTGTTTTGTGCAGAGCCAAGCATCTTACGCAAGccATTGTTGAGGCCGGCTGATGAAATGTCTGTACAAACCGAGTCTCGAGGTGAGAGTACATGTGATCTGGACTCTGACGTAAATGAGCAGCAAATTCCAACAAAGGATGAGCCAGATGATATGGCTATGGAAGAGGAGAACACTTTTAAACAAAACTTAGAAAAGAAATTGAAACAAATGACAAAACATGACGTTTTAAAAGCGATGGATTTGTTGAAAGCAGCTCGAAGAGAAGATGAGTCTGATGATGAGTTAAATGAAGAGTGTGAGAgGTGTGACGCTCCTTGCGACACTACAATTTCAAATGAAGAAACAGAGACAGAAGATAACaacgagaaattaaaaaaccaaatgaTCTCTTTGTCGGATGCCTGCAACAAgactattgattttaaaaacggCCAACTTTATGAGGTACGTAAGGTGGTGGATGTCTACGTCGAGTCGGCAGACGAGACTTTAGACCCAAGTAAGAGGATGACGACCAAGTTTAGGATGGAAGTGTGTAGTGACATGAAGAGGACTGATGCAGAGTTAAAGTCCAAGATTGATAGCGTGCAGGACATGATACAAACCACCAAGGAAGAGGTGGAGGTTTGTGTGAATGAAGACAACATAGAAGAGCGACTGTATGATGACAATGAGGAGGACAAAAGTGTGATAAAATGTGTGGTTAGTAATAAGAGAAAGTGTCCTCACAAAACTTCTTGGCAGTGTAAAAAGTGTGGCCACATGACCCGAAGAAAAGGTTCACTCATCATGCATCAGAGACAGAAACACAAACCTGACGAGTTCACTTGCTGTTATTGCGACAAACAGTTCCACAACGCCATCGCGTTGAGTGCTCACAAACGTTACCACAACAAGATGTTAAAACAACCCGACAAATCTGAGCGGCCTTCATACGTCTGTGAACATTGCGGAAAATCCTTCCAAATGAAAAAAACCCTTAAAGAACACTACTTTGCTAACCACAGTGTGGAAAAACCTTTTCAGTGTAAAAAGTGCCATAAAACATATGGGTCATCAGTCAGTTTGGACATTCACATGGCGACTCATTCTAAAGAAACTCCTTTTCTTTGTGACTTATGCGGGAAGAGTTTCAAACACTTGACTAATCTAAGGAGTCACAAGCGGTCACACCTGGACAGTAGCCGCAAAAACCGCCAGGTGTGTGATTTGTGTGGAAAGGGGTTCCGATCGCGGTTCCATTTGTCAGAGCACATGAACATACACAACGGGTTGCGGCCATACCCTTGCCCTGTGTGCAAAAAGAGTTTTGCCAAGAAGATTCAGCTTCGTCAGCACAGCTCAGCACACCTGGGCACCCAACCCTTCAAGTGCCCGACATGTGGGGTGGCGTTTAACCGTCGGGGAAACATGACCCAGCACCTCAAGAGACACGAACAGGAGCGCAAGTATGTCTGCAGGATACGAATAGGGACTCTGAACATTGGAACACTGGCAGGAAGAGTGGAGGAGAGAAGAGTTGGTGTACTAGGCCTGAGAGAGACCAAGTGGAGAGGGAGCAGCATGAGGGAAGTAAGGAGTGGCTTCATTCGGCAATGGATGGGAAATGATGAAGGGAGGAGAAAAGGAGTAGGCTTCGTAGTGAGAGAAAGAATGCAGGCGTAG
Protein Sequence: MGFVLKQSARPSLFNHDMTQFNSQIDEERGISVHPHVATVHYGSLEDGVNVITFQVEMDKRGETERMHLDRQVVNCFKTMQGSGEMMEPYNIVVEEVQTMQVLNEWAADVEQPATSKTVHMIDLPVCTTEDHDDGGNLHRIEGVGTVMRPADMSMHVMEFPVCRMDLMCRVCAEECHNLVPVFGEQGVAMDLPKKITWYLPIQVKQEDQLPLKLCSLCIAKLNSCHELVNMCVAADAKLRRLFCAEPSILRKPLLRPADEMSVQTESRGESTCDLDSDVNEQQIPTKDEPDDMAMEEENTFKQNLEKKLKQMTKHDVLKAMDLLKAARREDESDDELNEECERCDAPCDTTISNEETETEDNNEKLKNQMISLSDACNKTIDFKNGQLYEVRKVVDVYVESADETLDPSKRMTTKFRMEVCSDMKRTDAELKSKIDSVQDMIQTTKEEVEVCVNEDNIEERLYDDNEEDKSVIKCVVSNKRKCPHKTSWQCKKCGHMTRRKGSLIMHQRQKHKPDEFTCCYCDKQFHNAIALSAHKRYHNKMLKQPDKSERPSYVCEHCGKSFQMKKTLKEHYFANHSVEKPFQCKKCHKTYGSSVSLDIHMATHSKETPFLCDLCGKSFKHLTNLRSHKRSHLDSSRKNRQVCDLCGKGFRSRFHLSEHMNIHNGLRPYPCPVCKKSFAKKIQLRQHSSAHLGTQPFKCPTCGVAFNRRGNMTQHLKRHEQERKYVCRIRIGTLNIGTLAGRVEERRVGVLGLRETKWRGSSMREVRSGFIRQWMGNDEGRRKGVGFVVRERMQA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -