Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010001195.1:37554-39743[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.96 2e+02 4.8 0.0 2 23 41 63 40 63 0.88

2 15 8.3e-05 0.017 17.6 0.1 1 23 211 234 211 234 0.92

3 15 0.03 6.3 9.5 0.1 3 23 323 344 321 344 0.94

4 15 0.074 15 8.3 1.2 3 23 359 379 358 379 0.96

5 15 2.6e-05 0.0053 19.2 0.2 1 23 408 430 408 430 0.98

6 15 4.1 8.4e+02 2.9 3.1 5 23 451 470 450 470 0.83

7 15 0.1 21 7.9 0.0 3 20 480 496 479 498 0.92

8 15 0.14 28 7.5 0.3 3 23 510 531 509 531 0.93

9 15 0.00091 0.19 14.3 5.2 1 23 537 559 537 559 0.98

10 15 0.0013 0.27 13.8 5.1 1 23 565 587 565 587 0.96

11 15 8.2e-05 0.017 17.6 1.3 1 23 595 617 595 617 0.97

12 15 0.0011 0.23 14.1 0.3 1 23 623 645 623 645 0.97

13 15 0.04 8.2 9.2 4.7 1 23 651 673 651 673 0.87

14 15 0.057 12 8.7 7.5 1 23 677 699 677 699 0.98

15 15 0.0014 0.28 13.8 0.6 1 21 703 723 703 724 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.96	2e+02	4.8	0.0	2	23	41	63	40	63	0.88
2	15	8.3e-05	0.017	17.6	0.1	1	23	211	234	211	234	0.92
3	15	0.03	6.3	9.5	0.1	3	23	323	344	321	344	0.94
4	15	0.074	15	8.3	1.2	3	23	359	379	358	379	0.96
5	15	2.6e-05	0.0053	19.2	0.2	1	23	408	430	408	430	0.98
6	15	4.1	8.4e+02	2.9	3.1	5	23	451	470	450	470	0.83
7	15	0.1	21	7.9	0.0	3	20	480	496	479	498	0.92
8	15	0.14	28	7.5	0.3	3	23	510	531	509	531	0.93
9	15	0.00091	0.19	14.3	5.2	1	23	537	559	537	559	0.98
10	15	0.0013	0.27	13.8	5.1	1	23	565	587	565	587	0.96
11	15	8.2e-05	0.017	17.6	1.3	1	23	595	617	595	617	0.97
12	15	0.0011	0.23	14.1	0.3	1	23	623	645	623	645	0.97
13	15	0.04	8.2	9.2	4.7	1	23	651	673	651	673	0.87
14	15	0.057	12	8.7	7.5	1	23	677	699	677	699	0.98
15	15	0.0014	0.28	13.8	0.6	1	21	703	723	703	724	0.95

Sequence Information

Coding Sequence: ATGACTAATGTTGTAATTAATCTCTCATTAGGTGGTTTGGAATGCCCCCTGTGCTGCAAACATCAGCTCTCATTCGAGGAATTAAAGAAACACTTGTCGATATATATCTGGGGGTTCCTGCAGTGTCCGGTGTGTGGGGAACTGTTGATCGGACTGGAGAAGCTCGCCCAACACCTTGACAACCGTCACTGTGAGACTGGTGACCAGATATCGACAACGAGTAAGGGTCTCTGTGACAATGACGCGTCGGAGAAGAGTTCCGACTCGATCAGTTCCCATAGTGCAGCCAGCTCAGTAGGGCGTAGTATACCAACAAGTATTAAATTAGAAGAAGATGACATAAACGATGCTAATACTGTGTTTGGGAGGGCGGAAATTCCTGATAATACGGATCCTCTTACCACCAAAGAAATTAACTCCTCGCGGATTTTTTGCAGATCTGATACGACTAGAATAAAAGATAAAGTATCAAACTCGTTGAACAATCTAAGTGAACCTTTATATAATAACTCTTATGTAAATTCAGTTGGGCAGAAAAACTGTCGAACGCAGGCAAATTCCATCAAGATCATTAATAGCAGTGCCACAATCGATGTGAAAGGCACTGCACCGAATAATATAAACACTGGCTATATGTGTGAATATTGTGACATAGTGTTTGTGTCCCTAGATAACTTGCAAGAGCATGCAACTAATGCTCATAACATGAACAATATTGTTGTTAATGTTCCGAAAGAGCTGTTTCCTGAAGTGCTGCCGTCTAGCAAAAGGAAAGTGGTAAAAATTCACGGTCAAACGATAACTCTACAACCAGATTTATTGTCAGACTCGGACATGAAACAAACCTCGTCTGACAAGAAGAAAACTCAGGAAAAGATGTGTCATATCTGTGGTGGGACATCTCACCGCAATTTTCCGTCCAAGCGGCAGATGTACGTGGACAAAGAGTCGGACCAGAGGGTGATATGTAGCGTGTGTGTAGCTTGTTTCGAAGACGAGGACCTCTTGGCTAGGCATGGTAGGGAAATGCACGCAGGACTTGAAGTTTTCAGACCCCACTTAAGGAATAAGATTTGCCAACTCTGTGGGAAAGTTTTATTTCCGCACAACATTTCCCGCCACATGAAAAGTTCTCATGGCATAGACGGGGCAGTCCGCTCAATTTGTCAAGATTGTGGCAAAGTTAACTGCTCTGAAACACTACACAAGACTAATTTAAGTTATACATGCAACGTATGTGGTGAAAACTTTTCTACTGTAGTCGCCTTGCGTTCACACTTGTCCTCTCATTTGGAAATCTCAAACGAGAATGAAGTCTTCAGTGAAACTTCGTCTAGACAGAAAGTTtctgtttgtaaaatatgtggTGAAGtgcagtctaacatgagaaagCACATGGTGACGTGTCACAAGGAAACATCGCAAGAATCTGTCGCTTGCCCGGACTGCGACGAGATATATAGCAAGAACAAGTTGAAGGCTCACAGGGCAGAGTGTCCCAAGAAAGAATCTGACAAAGCCGTGGCATGTCCGGACTGCGGTAAGATGTGGGGCAATAAAAAGAAGATGAAGCTACACAGAGATCGCGTTCACCTCCGGATATTGCGTTTCGTTTGCCACGAATGCGGTAAAAAATTCTTCTGTAAGAGCGGACTCAACACGCATCTGCTGACGCACTCAAAGGTGAAGAAACACGAGTGCAAGTTTTGCAGCAAACGTTTCTCTTCGAAAACCAACTTGGACACCCACGAGTCCAAACATTTGGGGAAGAAGGAGAGTCCGTTTATCTGTAGCTATTGCGGACGTTTGTTCACTAACAAGCTATATCTACAGAACCATGAACGGCTCCATAAGGGTGAGCGTCCTTACGCCTGCAAGATCTGCGGCGCCAAGTTTGCCGGACTATCGACTCTGTACAGTCACAAGTACACGCACACGGACGAAAGGCCGCATCACTGCAACATGTGCGGGAAATCGTTCAAGACGACGGCCGCGCTGTACTTCCACAAGCAGCAGCATTCGAAACAACACAAGTGTGACGTATGCTGTCGAATGTTCAGCTATGTGCACAACTTGAAGCAGCATCTACTAACTCATACTAAAGACTACAGTTGCTCAGGATGTGGCGCGCAATTtaagtcattaaaaaaattgcaagttCATGAAAGACATGGATGTAGGCCTGGTTAG
Protein Sequence: MTNVVINLSLGGLECPLCCKHQLSFEELKKHLSIYIWGFLQCPVCGELLIGLEKLAQHLDNRHCETGDQISTTSKGLCDNDASEKSSDSISSHSAASSVGRSIPTSIKLEEDDINDANTVFGRAEIPDNTDPLTTKEINSSRIFCRSDTTRIKDKVSNSLNNLSEPLYNNSYVNSVGQKNCRTQANSIKIINSSATIDVKGTAPNNINTGYMCEYCDIVFVSLDNLQEHATNAHNMNNIVVNVPKELFPEVLPSSKRKVVKIHGQTITLQPDLLSDSDMKQTSSDKKKTQEKMCHICGGTSHRNFPSKRQMYVDKESDQRVICSVCVACFEDEDLLARHGREMHAGLEVFRPHLRNKICQLCGKVLFPHNISRHMKSSHGIDGAVRSICQDCGKVNCSETLHKTNLSYTCNVCGENFSTVVALRSHLSSHLEISNENEVFSETSSRQKVSVCKICGEVQSNMRKHMVTCHKETSQESVACPDCDEIYSKNKLKAHRAECPKKESDKAVACPDCGKMWGNKKKMKLHRDRVHLRILRFVCHECGKKFFCKSGLNTHLLTHSKVKKHECKFCSKRFSSKTNLDTHESKHLGKKESPFICSYCGRLFTNKLYLQNHERLHKGERPYACKICGAKFAGLSTLYSHKYTHTDERPHHCNMCGKSFKTTAALYFHKQQHSKQHKCDVCCRMFSYVHNLKQHLLTHTKDYSCSGCGAQFKSLKKLQVHERHGCRPG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447898;
90% Identity: iTF_01445145;
80% Identity: -