Tmon022558.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000891.1:11504-15064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.6 9.4e+02 2.7 3.6 2 21 265 284 265 285 0.94 2 13 0.071 15 8.4 0.1 2 20 291 309 290 311 0.94 3 13 0.0018 0.38 13.4 0.6 1 23 317 339 317 339 0.98 4 13 0.0014 0.29 13.7 1.1 2 23 436 457 436 457 0.97 5 13 2.9e-06 0.00061 22.2 0.9 2 23 502 524 501 524 0.95 6 13 0.0017 0.36 13.5 1.0 1 23 531 553 531 553 0.99 7 13 1.6 3.3e+02 4.1 0.2 2 16 555 569 554 571 0.92 8 13 0.0023 0.47 13.1 0.0 2 23 625 646 624 646 0.96 9 13 9.5e-06 0.002 20.6 0.7 1 23 674 696 674 696 0.98 10 13 7.9e-05 0.016 17.7 0.3 1 23 704 726 704 726 0.94 11 13 0.00084 0.17 14.4 2.4 1 23 744 766 744 766 0.98 12 13 0.0045 0.94 12.1 0.6 1 23 799 821 799 821 0.93 13 13 0.0055 1.1 11.9 0.2 1 23 828 851 828 851 0.92
Sequence Information
- Coding Sequence
- ATGGCTTTACGTATCTTGTTCCGAGCACGGCGGATCGAACCGTGTGAAAGTGACATCTCTGATACCAGTGCGCCAACAACAAACATTGCACTTCGACCAGAGAGCTTAACATGGTCAACAGATGCTACAACATCCTCGGTGGAGAAAATTGAGCTTTCTATAGAAGTCTCGCAGTCGAAAGGATTTCTGTTGGTTTCCCAACTAACCACACTTCAGCTGAAGTTTTTGTTGACTTCTAGGTACCGAAATCTTCCTATTAAACTCCTGTTGCAACCTACATGTCTCCAGTCCCCGGCTCAACCGAACCTCTGGTCGTCATCGCAGATCAAGAAAGAGCCAGGTCTGGGTAGTGTGGTTCAACATAAGACACCGTCGGGGGTACACATCACCTTGCAACAAACTGCCCCTGTTGCTGCTACTATTGTCCGGGCTAATCCTCCTGCCCAGTCTAATCCTCCATCTGCCCGCTTTAATCCTTCTCTTGCCCAGTCTATTCCTCCATCTGCCAGCTCTAATCCTTCTCTTGCCCAGTCTAATCCTCCTTCCACCCACTCTAATCCTTCTGCTGCCCATTATAATCCTCCTACTCGCTCTAATCCTTCTCCTACCCGTTCTAACCATCCTTCCCGTTCTAATCCTTCTCCTGCCCGTTCTAATCCTTCTCCTGCCCGTTCTAATCCTCCTTCCACCCGCTCTAATCCTCCTCCGGCCAGTTCTAATCCTGTTACCCCCCCTATTGCTTCTCCACAACCACCCACCCTCAAAAAGGTTCCTTTGGACATCAAACCCCGCAAGTGTAAGACGTGCCACTTTGCCTCCACCAGCCGAGAAGAAATGGACAAGCACCTCTGCTCGTTTCAGATGTCGTGGCAATGCAACGTCTGtatgaagtatttttatacCAAGGGCGCCCTTTTGAAACATAAAGGGGTTTGTAGATCCAAGTCTTACAAATGCACGCAATGTAAATTGAGCTTTGCTTCGCTCGAAAAGATGGCACAACACAGAATAATACATACCAAAGTTCTGGCCTATGTTAGAGAGGAAGATATGTCTGTCTGTTCCTGCGGCAAAAAGTTTGGGTGcaagatgatgatgaggatcCACAAACGGTATCACCTCGCCTACCCCAGAACCGAGTCGCCGACCGGCGCAAGTATTAGAAATGGGACGGATCGATTCTCAGGGAAGGCAGCGGCTGAGGCCGATCACATGAATGACGCTGAAGCCAACGTGCCGCCACAAATTGATAAAGAGATTCAAAATAGAATGGGCCACTTTATGCCAGGGGCTTGGAATAATCGCGTTTGTAACCTCTGCGGAATGGGTTTCGATAATGAACGTAAGTTCAAAAACCATAAACGAATGCACTACAGGCTTCGTCGTTCGATGGCAAAAAAGGAGCGCAAAAATCTAGAGGCGGAACAGATGAAAGGGCCGGAGGCCTCCGAACCTGCGCCGCCGACTATGACCAAAGATTCCAAGACTTGGTTCAGGAAGTGCAACTGCAAATACTGCGGGGAAGAGTTCCCGAACTCCTCGGCGTTGATCGCGCACATGCGTCAGAAGCACGCATTGATAAAACCTACCTTCAAGTGCGAGGAATGTCACAAGGTCATCATGAACCGCGGAGGTTACATAACTCACATAAAGTCCCACAAGGTGTGCAAAGTTTGTCTGAAGCTGTTCTCGTCGTTGGACCACCTGGCATACGGAGGCGTCCCGAAAAGGTCTTGCCACAAGTGCTTGCGATGCAACTCTCTTAAATTCACGACCAGGCCGGCGTGGCTGGCCCATTGCAAGATGCACGCAGCTAGTAAGTTGGGCAGGCTATCATCGACCATAGTGAACGCTTCTAGAGCGGCGGTGGTCCCTTGCAGTTTTTGTAACGAGATGTTTCCTGACCCGGCGGCTCTGGTTAGCCATCTCGAGATTCACGTTGGGAACAGCTCTAGTTCGATGAGGACGACGCTGGGAGAGGCGACAGCAGAGCCCAACAAAGTCAACCCTCTGTTGATCTACTCCTGCACGACTTGTGGTAACGCTTTCAGTTCCAAGGACGCTTGGACTCGCCACCAGAAGATGCACGCTACCGGCAGGCACAAATATTACCCTTGTAAAATATGTGGGAAGAAGTTTATCTCTTTGGAAACGTTTCAAGCTCATTCCGCCAACCATACTTCTAGTAACCAACCTGAGTCCATTCCGGCGGTGGAAACGGGCCTTGAGTTTCCGTGCAAACGGTGTCCATTTTCTTGCTTCTCACAACAGGCCCTCAACTCACACATGAGAATTCATGCGTCGTTGAAACCGGCGGGCGAGCTCGTCAACAACGGACAGGTTAAGGTCAATTCGACTAGAAAAAAGATGGTGTTGGTGAAGACGAGCAATGGCTACAAGTGCAGCGTCTGCCCTAAAGTTTTCCCAAACCATTATGCCGGGGCGAGTCATGTAAAGTCACATTTACAGGGACCAAAGAACTACATATGTCCGCTGTGTCCAAAGAAATATAAAGACTCTGAAATTCTTTATAAACACATCTATTTGGATCACCCTGATAATCGGCACTAA
- Protein Sequence
- MALRILFRARRIEPCESDISDTSAPTTNIALRPESLTWSTDATTSSVEKIELSIEVSQSKGFLLVSQLTTLQLKFLLTSRYRNLPIKLLLQPTCLQSPAQPNLWSSSQIKKEPGLGSVVQHKTPSGVHITLQQTAPVAATIVRANPPAQSNPPSARFNPSLAQSIPPSASSNPSLAQSNPPSTHSNPSAAHYNPPTRSNPSPTRSNHPSRSNPSPARSNPSPARSNPPSTRSNPPPASSNPVTPPIASPQPPTLKKVPLDIKPRKCKTCHFASTSREEMDKHLCSFQMSWQCNVCMKYFYTKGALLKHKGVCRSKSYKCTQCKLSFASLEKMAQHRIIHTKVLAYVREEDMSVCSCGKKFGCKMMMRIHKRYHLAYPRTESPTGASIRNGTDRFSGKAAAEADHMNDAEANVPPQIDKEIQNRMGHFMPGAWNNRVCNLCGMGFDNERKFKNHKRMHYRLRRSMAKKERKNLEAEQMKGPEASEPAPPTMTKDSKTWFRKCNCKYCGEEFPNSSALIAHMRQKHALIKPTFKCEECHKVIMNRGGYITHIKSHKVCKVCLKLFSSLDHLAYGGVPKRSCHKCLRCNSLKFTTRPAWLAHCKMHAASKLGRLSSTIVNASRAAVVPCSFCNEMFPDPAALVSHLEIHVGNSSSSMRTTLGEATAEPNKVNPLLIYSCTTCGNAFSSKDAWTRHQKMHATGRHKYYPCKICGKKFISLETFQAHSANHTSSNQPESIPAVETGLEFPCKRCPFSCFSQQALNSHMRIHASLKPAGELVNNGQVKVNSTRKKMVLVKTSNGYKCSVCPKVFPNHYAGASHVKSHLQGPKNYICPLCPKKYKDSEILYKHIYLDHPDNRH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445105;
- 90% Identity
- -
- 80% Identity
- -