Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010002663.1:52922-62513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00028 0.057 16.0 0.2 1 23 309 331 309 331 0.96

2 10 4.7e-05 0.0097 18.4 0.1 1 23 337 359 337 359 0.97

3 10 2.9e-05 0.0061 19.0 3.8 1 23 364 386 364 386 0.94

4 10 0.067 14 8.5 3.2 1 23 392 414 392 414 0.97

5 10 0.0093 1.9 11.2 2.7 1 23 420 442 420 442 0.98

6 10 7.7e-06 0.0016 20.9 0.4 1 23 448 470 448 470 0.98

7 10 9.9e-06 0.002 20.5 0.4 2 23 477 498 476 498 0.97

8 10 7.3e-07 0.00015 24.1 4.3 1 23 504 526 504 526 0.98

9 10 0.00012 0.024 17.1 0.9 2 23 531 552 530 552 0.96

10 10 0.0046 0.95 12.1 5.2 1 23 558 580 558 580 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00028	0.057	16.0	0.2	1	23	309	331	309	331	0.96
2	10	4.7e-05	0.0097	18.4	0.1	1	23	337	359	337	359	0.97
3	10	2.9e-05	0.0061	19.0	3.8	1	23	364	386	364	386	0.94
4	10	0.067	14	8.5	3.2	1	23	392	414	392	414	0.97
5	10	0.0093	1.9	11.2	2.7	1	23	420	442	420	442	0.98
6	10	7.7e-06	0.0016	20.9	0.4	1	23	448	470	448	470	0.98
7	10	9.9e-06	0.002	20.5	0.4	2	23	477	498	476	498	0.97
8	10	7.3e-07	0.00015	24.1	4.3	1	23	504	526	504	526	0.98
9	10	0.00012	0.024	17.1	0.9	2	23	531	552	530	552	0.96
10	10	0.0046	0.95	12.1	5.2	1	23	558	580	558	580	0.97

Sequence Information

Coding Sequence: ATGGGCAGTGTCGCGCTTGAGGGTGGAAAGGGATCTGCGAGAAGTGGCGATATCCAGGAAAGTGGCTCTCTTAAGAAGAAACATGGAGCATACCAGGGTTTCCAGGAAAAGCCTGAACTGAAAACTGGCAAGACGGGGACTGAAGAAAGGAAGCGCACCGAAAATGAATGCGCGAATACTGGGCAAAAGCTCAGAGTGCCGGAGGAGGAAGAAGAAGCAGCAGAGGTACTAGTCACAGAGGTAGACACTTCCTGTTTCCCCCCTGTAGAAAATCTGGAGGATGGTGACTACTCAGACTCTCAAGAAGAGCGTTCTGCTGATGAATTATCTGTGAGCTATTTTCTTTGTCTCCTAGCCAACCCCGCTATGCCCTCCTGGCTGGATATGATGAGAGTGAAGGCTCAAACCCGGCACTGTCTACCGACTGCGCTACTGGTGAATATTTTGCTGAAATATGGTTTGGAGGCAGCTCAGCCAACCAAACAGGACAATGGGCTCAACAAATCAGGAAGGTTTGGTTGTGTGGCCATTTCTACCAACCTGAAGAACACACAACTGCCGTGTGAAAAGGATGGGCCCATTGATTTGACTCAGTCGGATATACAACTCAAAACTAGCTTTAATGATTCGCTGAACTGTTCTATGCAGTCTCCTGTACATAATGATATCACACAAGGCGGGACACTATCGCCTATGATTAGTTCAGGTAGGAAGGTGAAGAACCGCAAAGTCAGGCGAGCTGACCTTGAGAATGTTGGACTAAACTCAGACATGAGTGATGGAAAGTTGGTAAAGACTTGTACAACTGATAATGGGAACAGTTCCCTTGAGCTTCATTGGTTGTTGTCAGGTGATCACAACGAGCCGTCCTCGTCAACGTCACGGCCAATCAAGCAACCGTCCATCCACTGGACACCCCAGACCTATGCTTGTTCCGAATGTGGTGTGATGTTTGCTTCCAACTTTTTCCTGAAGCAGCACCTGCTCGGCCATGACGGGGTCAAGAAGTTCGCTTGCGAGATCTGCGGTGTCAAGTTTGCCCGCAAGACGAGTCTAAGCACCCACGCTAATGTCCATACAGAGAAAAAGTTCCAATGTAATATCTGTGGTACCAAATTCACCCAGAAGTGTAGTTTAAAGAAACATTCTGTGATTCACACAGGAGAATTGCCCTACCCCTGCACATTGTGCGACGCAAAGTTTAGGTATTACACAAGTTTGAGTTGCCACCTCAAGATGCACTCAGGTGAACGCTCCTTCCAGTGTACCGTCTGTGATGCTAAGTTCCTCAACAACTGCAGCTTGAAGTCCCACTATGCGACGCACACTAAGGACCGACACTACCAGTGTGAGTCCTGCCCGTTGAGTTTTGCGGACCGTAGCAGTCTGACTCGTCACAAGCTAATCCATGATCCCGACAACTATGTTGTCTGCGCTATCTGCGGGTCCAAATTTCCATACAAGCATGCGTTGGCCCGTCATATGCGTACTCACACAGGAGATAGGCCATTCAAGTGTACAGTCTGCAACAAGAGTTTTTTCACAAAGTCTAACTTCAACAGCCACATGCTCCGGCACTCAACCAAAGGCAAATGTCTGATTTGTCACGAGTCATTCGTGCGGGAGGAGACTTTCAAGAAACACATGGCAGGCCATCCTGCGGTAAAACCTTTCCAGTGCTCATATTGCGAGCAGAGGTTTTGGAGGAAGGCTCACCTTAAACATCATGTTCTCCAGCATCTGGACAATACTCTAGTCTGCTGA
Protein Sequence: MGSVALEGGKGSARSGDIQESGSLKKKHGAYQGFQEKPELKTGKTGTEERKRTENECANTGQKLRVPEEEEEAAEVLVTEVDTSCFPPVENLEDGDYSDSQEERSADELSVSYFLCLLANPAMPSWLDMMRVKAQTRHCLPTALLVNILLKYGLEAAQPTKQDNGLNKSGRFGCVAISTNLKNTQLPCEKDGPIDLTQSDIQLKTSFNDSLNCSMQSPVHNDITQGGTLSPMISSGRKVKNRKVRRADLENVGLNSDMSDGKLVKTCTTDNGNSSLELHWLLSGDHNEPSSSTSRPIKQPSIHWTPQTYACSECGVMFASNFFLKQHLLGHDGVKKFACEICGVKFARKTSLSTHANVHTEKKFQCNICGTKFTQKCSLKKHSVIHTGELPYPCTLCDAKFRYYTSLSCHLKMHSGERSFQCTVCDAKFLNNCSLKSHYATHTKDRHYQCESCPLSFADRSSLTRHKLIHDPDNYVVCAICGSKFPYKHALARHMRTHTGDRPFKCTVCNKSFFTKSNFNSHMLRHSTKGKCLICHESFVREETFKKHMAGHPAVKPFQCSYCEQRFWRKAHLKHHVLQHLDNTLVC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445901;
90% Identity: iTF_01445901;
80% Identity: -