Tmon036697.2
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- L
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010002083.1:114079-124373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.4 83 6.0 5.9 1 23 115 137 115 137 0.98 2 26 2.1e-06 0.00044 22.6 4.1 1 23 143 165 143 165 0.99 3 26 3.4e-05 0.007 18.8 0.2 1 23 171 193 171 193 0.98 4 26 0.00023 0.047 16.2 0.4 1 23 218 241 218 241 0.97 5 26 0.0084 1.7 11.3 0.2 1 23 345 368 345 368 0.92 6 26 1 2.1e+02 4.7 0.1 2 23 379 401 378 401 0.88 7 26 0.083 17 8.2 0.2 3 23 471 491 470 491 0.98 8 26 0.0055 1.1 11.9 0.6 2 23 527 548 526 548 0.95 9 26 0.026 5.5 9.7 0.2 3 23 558 579 556 579 0.93 10 26 0.039 8 9.2 0.3 1 23 584 607 584 607 0.92 11 26 3.6 7.3e+02 3.0 2.4 1 23 663 685 663 685 0.94 12 26 0.13 27 7.5 5.3 1 23 689 711 689 712 0.95 13 26 0.18 37 7.1 2.0 3 23 787 809 786 810 0.93 14 26 0.0058 1.2 11.8 4.6 2 23 827 848 826 848 0.96 15 26 0.96 2e+02 4.8 0.5 1 23 858 880 858 880 0.94 16 26 5.5 1.1e+03 2.4 0.6 2 23 888 909 887 909 0.95 17 26 7.6 1.6e+03 2.0 0.1 1 13 958 970 958 974 0.87 18 26 4.4e-05 0.0091 18.5 0.1 1 23 1006 1029 1006 1029 0.97 19 26 0.3 62 6.4 0.2 1 23 1033 1055 1033 1055 0.97 20 26 0.29 60 6.5 1.4 1 23 1063 1085 1063 1085 0.96 21 26 0.0052 1.1 12.0 0.2 1 23 1093 1115 1093 1115 0.98 22 26 2.2 4.5e+02 3.7 1.7 1 23 1122 1144 1122 1144 0.94 23 26 6.5e-06 0.0013 21.1 1.0 1 23 1214 1236 1214 1236 0.98 24 26 9.2e-05 0.019 17.5 0.7 3 23 1244 1264 1243 1265 0.94 25 26 0.18 36 7.1 0.0 2 23 1290 1312 1289 1312 0.94 26 26 4.5 9.2e+02 2.7 2.9 2 20 1314 1332 1313 1336 0.73
Sequence Information
- Coding Sequence
- ATGTATCTCCTCTCTCCCCTGGCTACTGATGTATCTCCTCTCTCCCTGGCTAGTGACGTATCTCCTCTCTCCCTGGCTAGTGATGTATCTCCTCTCTCCCTGGCTAGTGACGTATCTCCTCTCTCCCTGGCTAGTGATGTATCTCCTATCTCCCTGGATAGTGATGTATCTCCTCTCTCCCTGGCTAGTGATGTATCTACTCTCTCCCGGGATAGTGATGTATCTCCTATCTCCCTGGATAGTGATGTATCTCCTCTCTCCCTGGCTAGTGATGTATCTCCTATCTCCCTTTTGTTCACAGTGCCATCTGGTTGTTCACAGACACACAGTGACCAGATGCCGTTCCGCTGCGAGTTCTGTAGTCGTCTCTTCAAACACAAACGGAGCAGAGACCGTCACATCAAGCTTCACACTGGGGACAAGAAGTACAGGTGTTCACACTGTGAGGCTGCCTTCTCTAGGAGCGACCACCTCAAGATACACATGAAGACACACGACAACCAGAAACCGTTCCAGTGCACTGTTTGCAACAGAGGTTACAACACTGCGGCGGCCCTTACGTCCCACATGCAGAACCACAAGAAGGAGCAACAGCAGCAACACAATGGTGCCAACAGCAACAGTAGCAGCAACACGCCTAGTCCCGGCAGCTTCCGGTGTCTGCAGTGCGGCGACACTTTCCGGAAACCTGACGAGCTGCAGAGCCACATGGTGACCCAGCACAGGGTGGACACCAGCCCACCACCCCTCCCTGTGGCTCGGGAACTTCTAGGGGGTCTCATTATGGGGGAGTCGTCCCTCACTAGCTCACAGGCCCGACCCTTGACCTTCCAGACACCCAAACTGGCCTGCATCTACTGCACCAAGGACAGTTTCACCACCATGGAGGCTCTCCAGTTGCACGTACAGGCCATGCATGGTTCGATTCTGAACGGTGAGATTCGCGACTATGGTGGCCACCTGCACCATCACCAGCCTCCATCCACCGCCCCTAGCCCCCACCACCACACCTCCCCTACCGCCAGCCTCCCCTACTCCTGCGAGCTGTGCACTATGAGGTTCAACTCTTTGCAAGGGTTACAGAAACACGCCCTGGGGGTGCACGGGTTAGCGGGAGATGGAGTGGCCCCCTTGTACTGCATGCACTGCTCTCTGCCCTTCCCTTCCGCTGCGCTCTTCGCCGAGCACTACGTCCTCATGCACGGAGGAGGGTCCTCAACTTCCGTCCGCATGTCCTCGTCACCCCCTTCATCCTCGGAGCAGCTGAAACCCACGGACCTGAGCAAGAAGTCGAGGAGACACAACAATCAACAATCGCCGCCGAACAAGAGACTCAAGGAGTCAACTGATGTGTCTGCCCCTGAGACATCGACTACCATGAATCAATACGACCAGCCGGGCACCCTCCTATGCAACCAATGTGGTGCAGCCTTGCCAGACTTCGAGTCGTTCCGCACCCATCTCAAGTCTCACCTGGAAGAGGCGGGAGGGCTCCGGGGTCTACTTGGGGGTGGGGGCACGGACCTGCTAGCTATGCTCGCCGCCTCCTCGGAACAACGCGTCAAGAGCCCCGCCCTACCCTGTCCCCACTGTGGCGCCAAGTTCTCCAGCCCAGAGGACCATCAACAGCACCTCGCCAGTCACTTCCTGGCCACGGCGACTGAGTACGGTTGTCAGAGCTGCCTCAAGCTGTTCTCCAAGCCTGACGAGCTGCAGAAACACCTCATGGATATCCACGCGCACCATCTCTACCGCTGTTCCCTGTGCAAGGAGATGTTCGACTCCAAGGTGGCCATACAGGTCCACTTCGCTGTGAAGCACAGCAACGAATGCAAGCTGTACCGATGCACAGCCTGCCCACTATCCTCAGCAGTGTTCCGTTCGGAGATGGACTTCGGTCTTCACGTCCGGACAATCCACCATCACCCCCCGCCGCCCCTTCCTCTGTCGCCGACCAAACTTCCCTCCTCCGCTTCTCAGCAGCAGTTTCGCTGCTTGTTCTGCCGCCTCAGCTTCCCGACTGAGCACGACATGCAGTTTCACTTGACGGTTCACTCCAAGCAGTTCCACTGTCCTTTCTGTCAAGAGGGCTTTCATGTGGAGTTCTTGTTAGACAAACACATGCAGACTCACCATACCACGCAGGTCCTGAGCAGCAGCTCATCGAATGGCGTGGACAACCCGAGTCAACAGAAATCCCCCAAGAGCAAACCTTCAAGTGGCGGCAACCCTTCAAACTCCATGGCGACTATTGGAAATAACAATACTTCTCTCaacattaacaacaacaacTCCTCGAGAGGCTCCAGCTCAGACAATGGAGTCGCTTCCAAGATACCTGAAAGCGCCAAGAATTGCTGTGACATCTGTGACCGGCGTGACTTCGCCAGCGAGTCCGAGCTGACGGCGCACCGGAAGCTGGTCCACCACGTGAAAACCGCCGGTGCTGGTGGGGGTAAGAATGGTGCAGTCAGTCTCCACTGCGCCTACTGCAGCGAGAACTGCAAGTCCAGGACGGAACTGGAGAACCATATGAAGACTCACTCCCAGGGCAGTGGAGGTTCGGGGAAACACAAGTGTAACATCTGCGATGAGCTGTGTCCGTCGGCAGCCATCTTGGCCGAGCACAAGTTGACGCACTGCAAGGTGGTCTCCGGGAGCGTCTGCACGCAGTGCAAGTCCAATCTCGTCAGCGAGGAGCAGTTCTACTCGCACCTACAGCAGCACGGAGGGGGTGGGGCAAACAACTCTACCCACAGTCCTCAACAGGTCGCCTTACCGACGCCATGCGTCGTCTGCAGACAGACGTTGATATCCGACATTGAGGTCCGCATGCACGCCCGGTTTCACCTGAAGAACTCCGAGCCGACCTACCAGTGCTTCCTGTGCCTGAAACAGTTTGAGTCCCAAAACCTGGTGGTGGCCAACGGAGGCCACCAGACCGCCACCTACGTGTGCAAGGAGTGCTACCACTGCCACAGTAAGACGTCGCCGTCCCCAGGCCAGGAGCAGGCGTTCAGATGTCCAGAGTGCCAGGTCAAGTTCGAGACGAGCTCTGCGCTGGAGGCTCATTTAGTGACCGTCCATAAGAAAACCTACCAGTGCATCAAGTGCCAGATAAGTTTCGAGACTGAACGCGAGATCCAGCTTCACGTGGCTACCCACCTGCTGACTGAGGGCAGCAGCCACGAGTGCCACCTGTGTCGCCGCCTGCTGTCCACACCACTTAAGTTGCAGGCCCACCTCATAGAGCACACCTTCGCGGGCTGCGGCAGTTACACCTGCTACCTGTGCAGCGCGGTCTTCACGGCATCCCAAGGCCTGCAGCAGCACATGCTAGAGCATGGCCTGGCGGCCAGGCCTTACGACTGCTCCAGGTGTAGCCTGCGGTTCTTCTTTAGAGCGGAGCTGGACAACCACAGCTACAGCCACCTGGAGGAGGCTATGGTTGAAGGTTCCGGGGCGCTAATAGATGGAGGCGACCTGGCTACCAAGGCTGCGTTTTACCATCATCTGACCACAAACGGCTCCTACGACCCTTCGCCCGATCTACAGTACTACAAGACTTTGAGACAAGACCCGGTCCAGCATAAACCACACCGACCCAAGGGGGGCAAATCGGGCCCTAAAGAGGGCACGTTTAGGTGCTCGGAGTGTGGGAAGGAGTTCAGTAGCGCCCTGGGTCTGCAGGCGCATCAGCGCCACCACAACAAGCACTCCAGGAGGTCGTGCGTGGAGTGCAATAAGGAGTTCAGCTCCGCCAGGAACCTTGGGGTACACATGAGGGCCCACCACCCCGGAGAGCACAGTTCTGATGACAGGACATCTGACGAGAAACTCGAGGGCGTGAAGCAGGAGAGAGTCCTACCCTGCACCGTCTGTCAGAAGGAATTCTTGGACGTCGACTCGTTGGAGGTCCACGTCTTGTCCCAGCATTCCCGGTGCCCACATTGTGGTGAGGCGTTCCTTCACCAGACACTCTGCGTCCAACACATCGCGCATGCGCATCCAGAGAGCGTCGCCATCAAGCAGGAACCGGCGGTGATAAAACAGGAAGATGAGGAGGATCTCGACGTGGCCTCCTTGTCGGCTCCTCCCGCCGCGGAGGAGCACTACGGACCGGGTCTGGACGAGGCGTCGGTGGATGTTGTGGGGGACGCCTCGTCCTTCAATGGAGACACGCGTAAGGACGACTCGTCGACGAATCAGAGTGAGGTGAACAATTCCGTCACTTCCTGTGAAGACAGTGATGACGTGGACAAGCGACAGTAG
- Protein Sequence
- MYLLSPLATDVSPLSLASDVSPLSLASDVSPLSLASDVSPLSLASDVSPISLDSDVSPLSLASDVSTLSRDSDVSPISLDSDVSPLSLASDVSPISLLFTVPSGCSQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCSHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKEQQQQHNGANSNSSSNTPSPGSFRCLQCGDTFRKPDELQSHMVTQHRVDTSPPPLPVARELLGGLIMGESSLTSSQARPLTFQTPKLACIYCTKDSFTTMEALQLHVQAMHGSILNGEIRDYGGHLHHHQPPSTAPSPHHHTSPTASLPYSCELCTMRFNSLQGLQKHALGVHGLAGDGVAPLYCMHCSLPFPSAALFAEHYVLMHGGGSSTSVRMSSSPPSSSEQLKPTDLSKKSRRHNNQQSPPNKRLKESTDVSAPETSTTMNQYDQPGTLLCNQCGAALPDFESFRTHLKSHLEEAGGLRGLLGGGGTDLLAMLAASSEQRVKSPALPCPHCGAKFSSPEDHQQHLASHFLATATEYGCQSCLKLFSKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLYRCTACPLSSAVFRSEMDFGLHVRTIHHHPPPPLPLSPTKLPSSASQQQFRCLFCRLSFPTEHDMQFHLTVHSKQFHCPFCQEGFHVEFLLDKHMQTHHTTQVLSSSSSNGVDNPSQQKSPKSKPSSGGNPSNSMATIGNNNTSLNINNNNSSRGSSSDNGVASKIPESAKNCCDICDRRDFASESELTAHRKLVHHVKTAGAGGGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSGGSGKHKCNICDELCPSAAILAEHKLTHCKVVSGSVCTQCKSNLVSEEQFYSHLQQHGGGGANNSTHSPQQVALPTPCVVCRQTLISDIEVRMHARFHLKNSEPTYQCFLCLKQFESQNLVVANGGHQTATYVCKECYHCHSKTSPSPGQEQAFRCPECQVKFETSSALEAHLVTVHKKTYQCIKCQISFETEREIQLHVATHLLTEGSSHECHLCRRLLSTPLKLQAHLIEHTFAGCGSYTCYLCSAVFTASQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHLEEAMVEGSGALIDGGDLATKAAFYHHLTTNGSYDPSPDLQYYKTLRQDPVQHKPHRPKGGKSGPKEGTFRCSECGKEFSSALGLQAHQRHHNKHSRRSCVECNKEFSSARNLGVHMRAHHPGEHSSDDRTSDEKLEGVKQERVLPCTVCQKEFLDVDSLEVHVLSQHSRCPHCGEAFLHQTLCVQHIAHAHPESVAIKQEPAVIKQEDEEDLDVASLSAPPAAEEHYGPGLDEASVDVVGDASSFNGDTRKDDSSTNQSEVNNSVTSCEDSDDVDKRQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -