Tmon011169.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000312.1:327666-352402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0086 1.8 11.3 0.9 1 23 263 285 263 285 0.96 2 15 0.3 63 6.4 3.2 2 23 292 315 291 315 0.89 3 15 0.0004 0.082 15.5 2.5 1 23 321 344 321 344 0.97 4 15 0.0002 0.042 16.4 1.8 1 23 350 372 350 372 0.97 5 15 3.6e-05 0.0075 18.7 4.5 2 23 379 400 378 400 0.96 6 15 3.1e-05 0.0065 18.9 1.8 1 23 406 428 406 428 0.97 7 15 0.014 2.9 10.6 1.9 5 23 438 457 435 457 0.93 8 15 0.0012 0.24 14.0 0.9 1 23 484 506 484 506 0.95 9 15 0.17 35 7.2 1.2 2 19 513 530 512 533 0.92 10 15 0.0056 1.2 11.9 3.9 1 23 692 714 692 714 0.97 11 15 0.00043 0.088 15.4 0.2 1 23 721 744 721 744 0.97 12 15 0.00031 0.065 15.8 0.3 2 23 753 775 752 775 0.96 13 15 0.0014 0.3 13.7 8.0 1 23 781 803 781 803 0.97 14 15 7.5e-05 0.016 17.7 3.4 1 23 809 831 809 831 0.98 15 15 7.8e-06 0.0016 20.8 1.3 1 22 837 858 837 861 0.91
Sequence Information
- Coding Sequence
- ATGGATGAAGTCGCTCCACTAACCTTCCCAGTGCTCAGGGAAGTAGAGAATGAGAATGCTATGGTGATACATGTCAACTCGGACACGGTCACCCAATGTGACCTTGGCTTGCCACTGCCTCCGCCCCTGCCCTTTGATGATACAATTAGCGAAATAGCACACACAGATAATTCAGCATCACTAACTCACCTTGTCTTACAGGATGAAATCCAAACTCTGGAGGACAGCGAACCATTAAATCTTATATCCACTAACATGGCAGACAACATGACTCGTCTTGTAAATTCAATCATGGAGGATACTGACTTGGATTCATTAAATCATCACTCTGATTCAGACCAATCCGATGGGATAGATCCAAACAGTGATCAATTGCCTATTTTACCCTCAATAAGTGAAATTTCAGAAGAATTCTTAAGCGGATCATCAAACATTGGTTTGTTTGGACATTTGATGATTCACGTTATTGATGAAAATGGCCACCCGGTCATGTTGCCGACTGATAGTTTAGAAACTGGGGATCTTGGGCCTTCTCTTCAATTACAATCTATGCCCAACGTTAATATAGATGAGCCATCTGTTGCGCcagaatatttatcaataaatccCCCTTTTAGAACATTCGAAATAGACCCATCCCTTATAGAGGGGAGCAACCGCCAGATTTTGGATCAAGAGTTTTTCATTGAGCACAAGCTAGAAGTTCTTCACTCATTGGTCCCGATAGAAGATCGCCAGCCCAGAAGAAGTTATGTGCTTGTGAAGGAAGATACTAAAGAAGATCCTTACATGTGTGACCTGTGTGGGGCCAGTTTTGAGCGTGCCCGTCAGTATTATGGCCATTTGCATCAACATACTGGAGAGAGGAAGTGGGAATGCTCGTTTTGCTTTAATAAGGTTTTTCGAAATCACTCTCTTCTTCGTTCTCATGAGAAACAATTCCATTTAAATCTCCGTCCCTATTGCTGTAAAATGTGTGGAGCTCGCTTTGATCGATTATCACAGCTGAGTTACCATGAGCGACGAGTTCACAACAATGAGCGCCCACACGTTTGTCAGATTTGCTTCAAGCCTTTTTTTAAACGCTCAGACTTGAAGGCACACCTCACCATTCACCTGGGGATCAACAAGTGCATCTGTGAAACATGCGGTCGCAAGTTCAACCACGTGTCTAATCTGATAAGGCACACACGGATGCATTCAGGTGTGAAACCATATCCGTGCTCTGTGTGTGGCCGTCGCTTTACTCAACTGAGTGCTCTTCATCAACACAAGACCTCACATCAAATTAAAAGAAGCATTCCATGTATCTTCTGCCGAAAGATGTTCAAGTCGTTCTCTGACATGAGAAAACATGTCCGCAAGATGCACAAGGCCAATCTAGAGTCTATTCCAGAGAATCAAGCTAAAGGTGTTTTGAAGCTTAAAGAGACTCCACAAAGGCGCAGCTATTACTGTAAAGTGTGTGGTGATACTTTTAAGTTTAGTGCTTTGTTAAAGAAGCATGAAGCGCAGCATGACAATGAGACTGCCTTACAATGCAAGGATTGTGATCAGGCATACGATAGTGTGGAGTATTTTAAGAGTCATTCATGccaatttaaaggaaatatgaGTTATTCAGAAATACCTAAGACTACATTTATGCCCACTGAGGAAGAGCAAGCCGCACTCAATTTGCAACTTCAGAATCTTCTGGATGAGCACAATAGTCTTATGGATGATCCTACAAGAGGACTCACCagtgaaattgttatttatgttaCTCGTGAGGGTCAAGATGAACCTACACAGTGTGCTAAACGAAAACTGGCTTTTGACAATCCTTCAACTGACAGTGATGATACTAACAAGAACAAGCCTTATCGCCGTCCTCTGCAACTTAATGTCCATGCCGTCGTCAGTACTATTGGGAGTAGCTCTAGCGATGATACTAAATATGACTCTAAAGATTCAGACACTTTGGCTCTAATGGAGCCAGACAATCAAGAgaaggaaaatattgaaaaacctCTCAAAGATTCACTTAAAACTGAAGAAAATTGTGATTCATTACACAATCTAAATCACATTTACTGCTGTCCAGAATGTTCaaagacttttttaaaaaagaataacttCAATCAGCACTTAgGGACTCATTATGTGGACCAGCAAAAGTTTATTTGCAGTGTCTGTGGTATTTCGTTTGCATGGAAATCCACCATGAACAAACACATGACAACAATCCACAGTGACTACCCATTACCAAAGCTAAGTTGCGAGACGTGTGGCAAGCAGTACTCCACTGCTACTCAAGTTCAGGATCATGTTAGAAGGGATCATAATAAAGAAAGACCTCATATGTGCAAGACATGTAACAAGACTTTTTACAAGAAATGTGATCTTAAAATTCATGaaagaacacaTACTCAGGAGCGGCCCTACATCTGTGAGACTTGTGGCAAAAGATTCTATCACGTATCCCATATGATCCGCCATGAGCGTGTCCATACTGGGTTGAAGCCCTACAGCTGTGATGACTGTGGTCGACAATTCACTCAATCCAGCTCACTTAAATACCACAggcaatatattttacacttccAAGTCATTTCTATTTTGCGATAG
- Protein Sequence
- MDEVAPLTFPVLREVENENAMVIHVNSDTVTQCDLGLPLPPPLPFDDTISEIAHTDNSASLTHLVLQDEIQTLEDSEPLNLISTNMADNMTRLVNSIMEDTDLDSLNHHSDSDQSDGIDPNSDQLPILPSISEISEEFLSGSSNIGLFGHLMIHVIDENGHPVMLPTDSLETGDLGPSLQLQSMPNVNIDEPSVAPEYLSINPPFRTFEIDPSLIEGSNRQILDQEFFIEHKLEVLHSLVPIEDRQPRRSYVLVKEDTKEDPYMCDLCGASFERARQYYGHLHQHTGERKWECSFCFNKVFRNHSLLRSHEKQFHLNLRPYCCKMCGARFDRLSQLSYHERRVHNNERPHVCQICFKPFFKRSDLKAHLTIHLGINKCICETCGRKFNHVSNLIRHTRMHSGVKPYPCSVCGRRFTQLSALHQHKTSHQIKRSIPCIFCRKMFKSFSDMRKHVRKMHKANLESIPENQAKGVLKLKETPQRRSYYCKVCGDTFKFSALLKKHEAQHDNETALQCKDCDQAYDSVEYFKSHSCQFKGNMSYSEIPKTTFMPTEEEQAALNLQLQNLLDEHNSLMDDPTRGLTSEIVIYVTREGQDEPTQCAKRKLAFDNPSTDSDDTNKNKPYRRPLQLNVHAVVSTIGSSSSDDTKYDSKDSDTLALMEPDNQEKENIEKPLKDSLKTEENCDSLHNLNHIYCCPECSKTFLKKNNFNQHLGTHYVDQQKFICSVCGISFAWKSTMNKHMTTIHSDYPLPKLSCETCGKQYSTATQVQDHVRRDHNKERPHMCKTCNKTFYKKCDLKIHERTHTQERPYICETCGKRFYHVSHMIRHERVHTGLKPYSCDDCGRQFTQSSSLKYHRQYILHFQVISILR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -