Tmon009473.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000246.1:473568-475343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.4 9.1e+02 2.7 0.0 3 23 135 156 133 156 0.90 2 15 0.092 19 8.0 1.8 2 23 162 182 161 182 0.95 3 15 6.2e-05 0.013 18.0 0.2 2 23 187 208 186 208 0.94 4 15 8.6e-06 0.0018 20.7 0.5 3 23 216 236 214 236 0.97 5 15 0.00092 0.19 14.3 1.7 3 23 244 264 242 264 0.95 6 15 0.0036 0.74 12.5 0.5 1 23 273 295 273 295 0.97 7 15 5.2e-07 0.00011 24.5 0.3 1 23 303 325 303 325 0.98 8 15 0.16 34 7.2 4.8 1 23 331 353 331 353 0.98 9 15 0.00014 0.028 16.9 0.3 2 23 386 407 385 407 0.97 10 15 0.00071 0.15 14.7 0.9 2 23 415 436 414 436 0.97 11 15 0.006 1.2 11.8 5.3 1 23 442 464 442 464 0.97 12 15 0.016 3.2 10.5 3.4 1 23 470 492 470 492 0.96 13 15 1.6e-06 0.00033 23.0 3.2 1 23 498 520 498 520 0.99 14 15 1.9e-05 0.0039 19.6 0.2 1 23 526 548 526 548 0.97 15 15 0.0042 0.86 12.3 1.6 5 23 557 575 556 575 0.97
Sequence Information
- Coding Sequence
- ATGAAACTAGAACCAGAAATTCAGATTAATGAAGATTCTGATGATTCAGATAAGTTTGGGgctggtgatgatgatgattatgatgatgatgatgtggaaGAGGAATACAGTGAAGAAATATCTGGAATCAAGGAAGAGAAAAATTACCAGAAAACCAAGTTAAATACTTCAAGATCTGATTCAACAACTTTTAGTCCACATGAACACCTCTCTAATGGCTTAAAGCCAAGTAAACATTCAGAACTGGACACAAGAGAGACGactgaaataaagtttgttatagATCCGCTAACGTCTGTTCTCTCTGAGGAACATCAGACTGATGGGACTTCTATCAACCCAGAAATGGTGACACTAGAATTAGCCAGCTCATCGGTGAGTACAGAAGAGCAGGGACTTGCCTGTGACGCTTGCCAAGCAGTGTTTCCAACTGTTCTCTCTTTGGTTACTCATAAGATGGACTCACACAAATCCACCAAAATGCGATGCAAGTATTGCAACACAGAATGTGACAAAGATCAACTGGAGATTCATGAAGACAGCCACAACCTACCGGTGGTGTGTCCTGTTTGTTGGAAAAGTTTCAGTTCAGACAGTAGTTTGAAGCAACACTTTATTCAACACAAAAGGGCAAACATTTCCATCTGCACCATGTGCGTGAAGGTCTTTCCGACCAAAAGTAAATTGAGGGCACACATGTCTAGTCATATGAAGGAGAAACGTCACTTGTGTGAGACATGTGGGAAGGAATTCAAATACAGGAATGCCATGATGCAACATGCTCAGACTCACTTGGATGACGAAAAGAGGGAGAAATTCAAGTGTGATGTTTGCAATACTCTTTTCAAAAGCAAACCTATCCTTAAAAATCACATGGCTCTTCACAATGAAGCGAGGGAGAGTAAGTATGTATGTGAAATATGTGGTAAGAAGTTTTTTAAACCATACAGTTTGAAGGTACACATTCAAGTTCATTATGACGAGCGCCCTTTCAAGTGCACATGCTGTGACATGGCATTCAAGTGGAAGAAGAACTTAGACAACCATAAAAGAACTCATGGGATTGGCGCTGACAGAAATGGAAAATCCATCAGACCTCCTAGGAACGGTAAGCCCCTTAAGGACAGACGACCACGAGAGGTGATGCCTAGAGTGCAGTGTGAAATTTGCGGCAAGTCCCTTGCATCAAAGGCAAGTCTTCAGTTTCATATGAAACGTCATAACGGGATTGTGACGGAGCTTGTCTGCGAGATATGCGGTAAGACCATGTGTAGTTCCCAGGCGATGAACAGACACCTCAAGATCCATCAGGGCATCAAACCGTTCCAGTGCAAGTTCTGTGGGCGCACGTTTCGTACCAAGATCTGCCGCGATGACCATGAGAGAACACATACCGGAGAGAAGCCTTTTCGCTGTGATTTCTGCGGCAAGTGTTTTGGCTGTAAACCTCTCCTGACAGTGCACCGAGCCATCCACCTGGACTTACGACCATACACCTGTTCGTATTGCTCCAAGGCATTTAGGCGCCGGCCACATCTTGTGCAGCATGTTCGAACACACACAGGGGAAAAGCCCTTTGCCTGTGAGATCTGTTTACGTGCATTCGCCCAAAAAGGTGATATGACAAAACACATGCTGACCCACTCAGAAGAACGCCCCTTTATTTGTGAGTGCGGTGTGAGCTTTCGTCAGAAGAGGGACCTTgataaacataagaaaaaacatattgaaGGGGAGCCGAGCTTCCTGACCTCTTTGCAGCAGCCCAACTTTTAG
- Protein Sequence
- MKLEPEIQINEDSDDSDKFGAGDDDDYDDDDVEEEYSEEISGIKEEKNYQKTKLNTSRSDSTTFSPHEHLSNGLKPSKHSELDTRETTEIKFVIDPLTSVLSEEHQTDGTSINPEMVTLELASSSVSTEEQGLACDACQAVFPTVLSLVTHKMDSHKSTKMRCKYCNTECDKDQLEIHEDSHNLPVVCPVCWKSFSSDSSLKQHFIQHKRANISICTMCVKVFPTKSKLRAHMSSHMKEKRHLCETCGKEFKYRNAMMQHAQTHLDDEKREKFKCDVCNTLFKSKPILKNHMALHNEARESKYVCEICGKKFFKPYSLKVHIQVHYDERPFKCTCCDMAFKWKKNLDNHKRTHGIGADRNGKSIRPPRNGKPLKDRRPREVMPRVQCEICGKSLASKASLQFHMKRHNGIVTELVCEICGKTMCSSQAMNRHLKIHQGIKPFQCKFCGRTFRTKICRDDHERTHTGEKPFRCDFCGKCFGCKPLLTVHRAIHLDLRPYTCSYCSKAFRRRPHLVQHVRTHTGEKPFACEICLRAFAQKGDMTKHMLTHSEERPFICECGVSFRQKRDLDKHKKKHIEGEPSFLTSLQQPNF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445029;
- 90% Identity
- iTF_01445029;
- 80% Identity
- -