Tmon005744.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema monikensis
Gene Symbol
-
Assembly
GCA_902151445.1
Location
CABFVZ010000136.1:531612-559363[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.6e-06 0.00096 21.6 0.2 1 23 387 409 387 409 0.97
2 10 1e-05 0.0021 20.5 0.7 1 23 415 437 415 437 0.97
3 10 5.1e-06 0.001 21.4 1.0 1 23 441 463 441 463 0.98
4 10 4e-07 8.3e-05 24.9 0.2 1 23 469 491 469 491 0.99
5 10 6.3e-07 0.00013 24.3 3.0 1 23 497 519 497 519 0.98
6 10 1.9e-06 0.0004 22.8 1.1 1 23 525 547 525 547 0.99
7 10 1.5e-06 0.00031 23.1 0.4 1 23 552 574 552 574 0.98
8 10 5.6e-06 0.0012 21.3 0.6 1 23 580 602 580 602 0.97
9 10 0.0017 0.35 13.5 6.2 1 23 608 630 608 630 0.99
10 10 0.0029 0.59 12.8 2.8 3 23 639 660 637 660 0.93

Sequence Information

Coding Sequence
atgcctTTTATTAACTACAGGAAACAAGATGACACAACTGGTACTAGCAAGGTCCGAGAAGACGACTTCAAACCCAAGCAAGTGTGTTTCACGTGCGTCTCAAAGCTGGAGATGTGCGTGGACCTCGTCGAATTAAGTCTTTCCGCCGAGTTCAAGTTCGACTCAATCCTACAGACCAGATTCGGTGCGCTGAAGACACTCGCCACAGATTCGTCTCAAATACAAACTGAAATAGACCCCGCTAAAGCTGGCGGATTGGGCGAGACCAGTATTGGCTGCCTTCCTCTCTTCAACCCTCGCGCCACCCGCGGATGGTCGGACGATCTTGTCAAGGCTGACCATGGAGCGGGGAACACCGTGACAGTGCAACACGACGGAAGCGTGATCGTCCTCGGCAAGGTGGACTCGGAACACACCCACGGTCGTGAGGATTGCCAGGACATTCTCCTCATGGTCGAACTCAAATACAAGGACATAGCAGACTCCATTCAGACCGGGCTCCTAAAGGCTGCGCCCACCATCGCTTACACCATCGACCCAACGGACGCCTCTTTGACCAAAACGCACCCTCACATCTTCACAGAAACGGACAAGACTCATACTTTGGCGTACACTAATGAGATACATTCCTTATCGGGTGGGAAGACTCTTACTTATACAGTTGAAGCGGAGCAGGACTCCTCGCCAAAGACTTATTCCTTGACGTATTCCACGGATCCCCTCCCGGAAAGCGCCGCAGGAAAGCCTCAGACGCTGACCTTCACGGCAGATGAGCAACAGCTTCTCTCGTCCAAGACGCACACCTTCGAATACACGGTGGACCAACAACACGACACACTAGACAAACAAGATGTGTCTCCATATTCTGAAGACACCCATTCTATCGACTACGCGACCATCGACAGTGACTCACATCCTGGTAAAATTCACATGATGACCTACTCCACGGAGACAGACGCTGTAACCAAGAGCCAGATCCTGGCCAGGTCCCTCAGCAATGCTATCGAAGAGCAAGCCAAAGAGTTGGCATTCTCTGATAAGGCGAATGAGACGCTGGCGACCATAAATGGGACTCCAGTGCTACTAACAAATGATGCTAACAAGTACAAAGACACCGACACAGATCAGACCATACTGCCTCAGCGTCCTGAGAAACCATTCCCTTGCACGATCTGCTCCAAGGGCTTCATGCGACGAACTAACCTCAACGCTCACATGGCTGTTCACACGCAAGTCCGCCCTCACGTGTGTGATCAGTGCGGGAAGAGGTTTGTGGTCCGCTGGGACCTGACGCTTCACCAGCGAATACATTCTGGTCTCTTCTCCTGTGAGTTCTGTGACAAAGCATTTAGCGTCCGGGCAAAACTGGAGCGCCATCGTCGAATGCACACGGGCGAGCGTCCGTACCCCTGCCCCACTTGTGGCAAAGCGTTCGGGGAAAAGCGCAACCTCGAGTCGCACCAGCGGACCCACTCGGGCGAGCGACCGTTTGTCTGCAACACCTGCGGCAAGACGTTCCGTGTGCGCTCGCATCTCACAGACCACCGCCGGGTCCACACTCAGGAGACGCCCTTCACCTGCGACATCTGCGGAAAGTCGTTCAAGTGGAAGACAAACCTCAACATCCACCTCAAGACCCACACGGGGGAACGCTTCCCGTGCGTGGACTGCGGCCGAGAGTTTGCCCGGCGCTCGGACCTATTGAAACACCGGCGCAACCACTCGGCCGATCGGTCTCACGTGTGCGGTATCTGCGGTAAGGGGTACAACGACAAGGCGATGCTTCAGAAACACCTGAAGTCGCACAGCGACGACAAGCCCTACACTTGCGACGTTTGCGGGAAGAGTTTCCATTTTCACTGGTATCTAAGTACTCATAAGAAGACGCACACAGAGGACAAGGAAGATCATCTTTGTGGAGACTGCGGGAAATTGTTTTACAAGAAGGGGAATTTGGTTGCTCACACTAAATTGTGTCATTCAGACACGCACACTGTAATAATATATTCAGCACTAAACTGGTTCAACCCAAAACATTTGTCTGCTGCTCGACTTAGTCGAGGCATCTTCCTGCCATTGCGTGTTACAGCTGCAGATCCATCCTATCCGAAAGGTCTGCGCAGTCCACTACTGCTAAAATGTGGACACTCCATATGTGAAGGATGCATCCGTACATGTATCCAGAATGGGGACTCCATCTTGTGCAGCGCTTGCGGCAAGACTTCTACTTGTGAACGGAACAACTCAAACATCTATGGGGAATTCCCTTTCCACCTGTACCTCCTCGGCTCGTTGGCCGCTCGACAGTGGAATCAGAACTTTGGGGATGCTAAAATATCATTCCTCCCGGCGGGTTCTAACTTGAACCCGCGAAGATTCAAGAGGGGCAGACCAGGAGAACAGATCAAACAAAAGGCTGAGCTGTGCGAAGAGTGTGTCAAGTTGCCTGCCGAGTGGTCCTGCCCTTCTTGTGAGGTGCTCTACTGCAACACTTGCTTCGTGCAGGTCCACAAAAGTGCGAAGATCCTGATGAAACACACGAAAGTGCCGGCCCCACTTGGTAAGGCGCTGGCCAAGGCTCGCCTTGTGTCACAGTGCAAGAAGCACCCCTTGGATAAACTCGAGTTTTACTGCAAACCTTGTGACGAGGTGATCTGCGCTCACTGCATGGTGAACCCCCACCAAGGTCACGAGATCATCACTCTGGAGGACAAGAACAAGGATGGGTTGGCCGAACTGGAGGAAGCCTACGAGAAAGCGACCGGCATTATGAAACGTTTGCTGTACACCCAGAAGAATGTGACGCTCACAATATTGCACATATACCTGACTAGAGAGACATATCATAGAATTGTGAAACGCCGTACAACTCCGTACTTTTAA
Protein Sequence
MPFINYRKQDDTTGTSKVREDDFKPKQVCFTCVSKLEMCVDLVELSLSAEFKFDSILQTRFGALKTLATDSSQIQTEIDPAKAGGLGETSIGCLPLFNPRATRGWSDDLVKADHGAGNTVTVQHDGSVIVLGKVDSEHTHGREDCQDILLMVELKYKDIADSIQTGLLKAAPTIAYTIDPTDASLTKTHPHIFTETDKTHTLAYTNEIHSLSGGKTLTYTVEAEQDSSPKTYSLTYSTDPLPESAAGKPQTLTFTADEQQLLSSKTHTFEYTVDQQHDTLDKQDVSPYSEDTHSIDYATIDSDSHPGKIHMMTYSTETDAVTKSQILARSLSNAIEEQAKELAFSDKANETLATINGTPVLLTNDANKYKDTDTDQTILPQRPEKPFPCTICSKGFMRRTNLNAHMAVHTQVRPHVCDQCGKRFVVRWDLTLHQRIHSGLFSCEFCDKAFSVRAKLERHRRMHTGERPYPCPTCGKAFGEKRNLESHQRTHSGERPFVCNTCGKTFRVRSHLTDHRRVHTQETPFTCDICGKSFKWKTNLNIHLKTHTGERFPCVDCGREFARRSDLLKHRRNHSADRSHVCGICGKGYNDKAMLQKHLKSHSDDKPYTCDVCGKSFHFHWYLSTHKKTHTEDKEDHLCGDCGKLFYKKGNLVAHTKLCHSDTHTVIIYSALNWFNPKHLSAARLSRGIFLPLRVTAADPSYPKGLRSPLLLKCGHSICEGCIRTCIQNGDSILCSACGKTSTCERNNSNIYGEFPFHLYLLGSLAARQWNQNFGDAKISFLPAGSNLNPRRFKRGRPGEQIKQKAELCEECVKLPAEWSCPSCEVLYCNTCFVQVHKSAKILMKHTKVPAPLGKALAKARLVSQCKKHPLDKLEFYCKPCDEVICAHCMVNPHQGHEIITLEDKNKDGLAELEEAYEKATGIMKRLLYTQKNVTLTILHIYLTRETYHRIVKRRTTPYF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-