Tmon012107.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000352.1:138051-143176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3e-05 0.0028 20.1 0.4 2 23 395 416 394 416 0.97 2 10 0.014 2.8 10.6 0.4 1 23 426 448 426 448 0.97 3 10 6.9e-06 0.0014 21.0 0.6 2 23 510 532 509 532 0.94 4 10 0.052 11 8.8 0.9 1 23 617 640 617 640 0.94 5 10 1.2e-05 0.0025 20.3 1.5 2 23 682 703 681 703 0.97 6 10 2.2e-06 0.00046 22.6 0.5 1 23 709 731 709 731 0.98 7 10 2.3e-05 0.0047 19.4 1.7 1 23 737 760 737 760 0.96 8 10 1.4e-07 2.8e-05 26.4 0.7 1 23 766 788 766 788 0.99 9 10 1.1e-05 0.0022 20.4 4.4 1 23 794 816 794 816 0.98 10 10 6.8e-07 0.00014 24.2 0.7 1 23 822 844 822 844 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATTCTGGTGGCTTGCCATCTGTGTCGACACATCGAGACTCCCAGTTAGTCTTAGACTCTATAGTCCCCAGCATCCGCTCCGAGGTGGTGAAGCTATGCAGCGCCGATCCAAGCAAGAGCAAACCAGTTGCGGATGTTGATGAACCGAGGGCCACCGAGCTTATCAGTACCCAGTACATCAACATCCATCGAGTGTCTGACGATGTCAGCCTGGATAAAGCTCTGCAGGTGGACAATACGGAGCTAATCCAGCACCACGTACTTCACGGAGGAATGGTGGTGGACATGATGGTGCCTGTGTCTGCTGGAACGGCGCCGGACTTCTCCCATGCCGCCCATCAGTATATCTCGGACCACTACGACACGGACGCTATCCTGACGGACCATCTCACCGAGGAAGACAAGAAGCTAGCAGCAGCGCTGGTAGCGGTGCAGCTCGTTCATCAACAGAAAAACCACCACGTGGGATCGGATTCCAACACCATCGTGAGCACGGCCGGACTGTCGGGGTTCACGTCCCCTGTGTCCGTGACGCGGCTCTCCAAGATGCATCAGCACATACCGGTGTCTCTAGCCGACCACTCTCAAATAGCCTCACTGGGGGCCATGTCCCCGGTGTCTGTGACACAACTCGCCAAGATGCACCAACACATACCGGTGTCTCTAGCCGACCACTCTCAGATAGCCTCACTGGGGGCCATGTCCCCGGTGTCTATCGTGGACAAGCCCACGGTGTCGGCAATGGTGTCTAGTTTCATACAGGCTGTGGAGGAAGAGGTGGCGGTGCAACAGAGCCTGTTGGAGCATCATGGCGCTGACACACAGACAATGAAGCTGTACCAGCCGCAACTTCCGCTTCCCCCACTCAAGAAGGTGCTCTCCAGTCATTCTATAGGCACTAGGAGGCCCCAGTTAACCCCAAACCAAGTGACTACTCTGTCAGAGCAGCTCAAGGAGGAATATGGTATCAAATGTGAGGGCATGGATGAGGACCTTGGAGATGACAGCGAAGAGAATGGCCGTGACGAAGATGATGACAACGACTCAGACTTTGACCTGGAGACTCATCTGCGGCCATCGCGGCGCTCCCTCCCTCACAAGAAGCGCATTTCTCGAAAGCTAAAGAACCTCAAGAAGGCGTCATCTCCTTCCCGAAGCATCCTCAACAAGTGTCTCAAGTGTAACAAGTGTGGGGAACAGTTTGTAAATCAAGCAGCATTAACCTCGCACCGACTCACACACTTGCCTAGCGCTGCCAAGAAGCCCTCCTTCAACTGTGAGCTGTGCGGGAAGGCTATTGCCAATCAGCTCAAGTTCTTTGAGCACCTCAAGTCACACTACGAGCCCGCCTTGTTGAATAATAATGACGAGGTGATCAACGACCTTGATGCTGCCCAGACGAGTTCCAAGCAAAACACTTCCAAAGAGTGTGTGCTTCCCCCCGTTAAGTCTGTCGAAGGAGGAGAGATAGAAGTGGGAAAGCCAGCGCCGGAGCTCGTAGGggccctccctcccccccttacTTGCCCTCAGTGCGGCAAGACGTTCCGCCGCCAGAGGACGTTTGAGACACATGTTAGTGTGGCTCACCCGAAGCAGGAGGAGATAGAGGAGTTCAGTGAACCCGAGGACTTGATGGAGGGTATTAGAGGGGTGGGGGTAGGGGTAGAAGATGACTCGGGTGATGACATGACCTGTCTACCGCCTGTCCGAGGACTCAAGCCGGGAGTGGACAAGGTATGGTACCGAGAGGAGGACCTCCACGCCACAGAGGTTGACCTGCagGCTATAGAGGCACAGCACCATCAGGTGTCCCACGACGGACTCACCAGTGAGGAGGATCACATTTGTGAACTTTGTGGAGACATCTACGAGAGCCGGCATACTCTGACCCAGCATGTCAGGGCAGAGCACCTGGATCTCCACGATCGCCGCGATGGGATCATTATCCCTCTCAAGAGAAAGGGTGGGGGGCCCTTCTCAATGACAGGCAAGCACTCTAGGAGCTCACACAAGCGAGCTGGCTCCCTCACTCTGACCTGCCCCCAATGTGGGCGAGTGTTTAATCACCGCAACTCGCTGGTATACCACCTACGCTCGCACTCGGGTGAGCGGCCGCACCAGTGCGAGGTGTGTGGCAAGAGCTTCTTTGCTGCGAGTGCTCTCAAGGTTCACATGCGTCTTCACTCGGGGGACAAACCTTACAAGTGTGAGAGCTGTGGCCGCCACTTCAGGCAGTGGGGGGACCTCAAATACCACCGCATCTCGATACACACGGCTCAGAGGAACTACCAGTGTGAATACTGTGGCAAGGACTTTGCGCGCAAATACTCGCTCATTGTCCACCGGCGTATTCACACCGGCGAGAAAAACTACTGCTGCGAGTACTGTAACAAGAGCTTTCGAGCCTCGTCCTACCTGCAGAACCACCGGCGCATTCATACAGGTGAGAAGCCGCATCCGTGTCCAGTGTGCGGCAAACCATTCAGAGTGCGTTCGGACATGAAGCGCCACCTCAACACCCACCAGCGAGACCGAGGGTCCCGTGGAGGGGGGACTCTGTCCTCCACTAAACTGGAAACTCCGGACGAGATGGAGGATGTGGACCAGGAGGATCAGGCGGCCATCACAGGACTCGCTCAACATCACACTATGCAGGCTATGTCTCACATGACACCAGTGACGGAGATCACTATCCAATCAGAGCAGACTACAGACAGTATCCTACCCGACGATCACATGGCTGAGAGCGACCAGCAACCCATCAACCTCAACATTGCTGTACCTGCCCGTCATGCATTGGGCCCCGACGAGGTCATTCACTACACTAGGGACCCTCTAGAAACTGTCAGGGACGGGACAGTGTTCGTGTGGCCCATCTACATGGCATAG
- Protein Sequence
- MEDSGGLPSVSTHRDSQLVLDSIVPSIRSEVVKLCSADPSKSKPVADVDEPRATELISTQYINIHRVSDDVSLDKALQVDNTELIQHHVLHGGMVVDMMVPVSAGTAPDFSHAAHQYISDHYDTDAILTDHLTEEDKKLAAALVAVQLVHQQKNHHVGSDSNTIVSTAGLSGFTSPVSVTRLSKMHQHIPVSLADHSQIASLGAMSPVSVTQLAKMHQHIPVSLADHSQIASLGAMSPVSIVDKPTVSAMVSSFIQAVEEEVAVQQSLLEHHGADTQTMKLYQPQLPLPPLKKVLSSHSIGTRRPQLTPNQVTTLSEQLKEEYGIKCEGMDEDLGDDSEENGRDEDDDNDSDFDLETHLRPSRRSLPHKKRISRKLKNLKKASSPSRSILNKCLKCNKCGEQFVNQAALTSHRLTHLPSAAKKPSFNCELCGKAIANQLKFFEHLKSHYEPALLNNNDEVINDLDAAQTSSKQNTSKECVLPPVKSVEGGEIEVGKPAPELVGALPPPLTCPQCGKTFRRQRTFETHVSVAHPKQEEIEEFSEPEDLMEGIRGVGVGVEDDSGDDMTCLPPVRGLKPGVDKVWYREEDLHATEVDLQAIEAQHHQVSHDGLTSEEDHICELCGDIYESRHTLTQHVRAEHLDLHDRRDGIIIPLKRKGGGPFSMTGKHSRSSHKRAGSLTLTCPQCGRVFNHRNSLVYHLRSHSGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCESCGRHFRQWGDLKYHRISIHTAQRNYQCEYCGKDFARKYSLIVHRRIHTGEKNYCCEYCNKSFRASSYLQNHRRIHTGEKPHPCPVCGKPFRVRSDMKRHLNTHQRDRGSRGGGTLSSTKLETPDEMEDVDQEDQAAITGLAQHHTMQAMSHMTPVTEITIQSEQTTDSILPDDHMAESDQQPINLNIAVPARHALGPDEVIHYTRDPLETVRDGTVFVWPIYMA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450840;
- 90% Identity
- iTF_01445869;
- 80% Identity
- -