Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000054.1:754911-758970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0035 0.73 12.5 1.8 2 23 11 32 10 32 0.97

2 19 0.064 13 8.5 3.2 1 23 38 60 38 60 0.98

3 19 0.028 5.8 9.7 1.7 2 23 67 88 67 88 0.97

4 19 0.00016 0.033 16.7 3.3 1 23 94 116 94 116 0.98

5 19 0.017 3.5 10.3 4.7 1 23 127 149 127 149 0.96

6 19 0.00028 0.058 16.0 0.1 2 23 156 177 155 177 0.97

7 19 1.1e-07 2.2e-05 26.7 0.7 1 23 183 205 183 205 0.98

8 19 1.3e-05 0.0026 20.2 4.9 1 23 211 233 211 233 0.98

9 19 7e-05 0.014 17.8 4.6 1 23 239 261 239 261 0.97

10 19 1.5e-05 0.003 20.0 0.5 2 23 307 328 306 328 0.97

11 19 0.00028 0.057 16.0 4.9 1 23 333 355 333 355 0.97

12 19 0.52 1.1e+02 5.7 5.2 1 23 361 383 361 383 0.98

13 19 0.016 3.2 10.4 1.5 2 23 390 411 389 411 0.97

14 19 0.00014 0.028 16.9 5.2 1 23 417 439 417 439 0.98

15 19 0.24 48 6.8 6.4 1 23 450 472 450 472 0.97

16 19 0.00032 0.067 15.7 0.1 1 23 478 500 478 500 0.98

17 19 5.6e-07 0.00011 24.5 0.3 1 23 506 528 506 528 0.98

18 19 1.3e-06 0.00027 23.3 0.6 1 23 534 556 534 556 0.98

19 19 1.7e-06 0.00036 22.9 3.6 1 23 562 584 562 584 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0035	0.73	12.5	1.8	2	23	11	32	10	32	0.97
2	19	0.064	13	8.5	3.2	1	23	38	60	38	60	0.98
3	19	0.028	5.8	9.7	1.7	2	23	67	88	67	88	0.97
4	19	0.00016	0.033	16.7	3.3	1	23	94	116	94	116	0.98
5	19	0.017	3.5	10.3	4.7	1	23	127	149	127	149	0.96
6	19	0.00028	0.058	16.0	0.1	2	23	156	177	155	177	0.97
7	19	1.1e-07	2.2e-05	26.7	0.7	1	23	183	205	183	205	0.98
8	19	1.3e-05	0.0026	20.2	4.9	1	23	211	233	211	233	0.98
9	19	7e-05	0.014	17.8	4.6	1	23	239	261	239	261	0.97
10	19	1.5e-05	0.003	20.0	0.5	2	23	307	328	306	328	0.97
11	19	0.00028	0.057	16.0	4.9	1	23	333	355	333	355	0.97
12	19	0.52	1.1e+02	5.7	5.2	1	23	361	383	361	383	0.98
13	19	0.016	3.2	10.4	1.5	2	23	390	411	389	411	0.97
14	19	0.00014	0.028	16.9	5.2	1	23	417	439	417	439	0.98
15	19	0.24	48	6.8	6.4	1	23	450	472	450	472	0.97
16	19	0.00032	0.067	15.7	0.1	1	23	478	500	478	500	0.98
17	19	5.6e-07	0.00011	24.5	0.3	1	23	506	528	506	528	0.98
18	19	1.3e-06	0.00027	23.3	0.6	1	23	534	556	534	556	0.98
19	19	1.7e-06	0.00036	22.9	3.6	1	23	562	584	562	584	0.99

Sequence Information

Coding Sequence: ATGGCAAAGCACAACCCGGATAACCAGATTAAATGTGACGTGTGTTACAAAACATGCCCATCCGGGTTTCAACTGAAGCAACATTTGAAAATCCATGAGACGGTGAAGCTATACTCGTGCGATATGTGTTCATATGCGAGTCACGTACAGGTGAACCTACATGCTCATAGAAAGAGACACTTCAACGATTACAAGGCAAGGTGTGACGTGTGTAACAGAGGTTTCTACTCCATGTGTTCGTACAAGTTACACCAGGCTGTCCATAAAGACGAGATGCCCTTCAGTTGCGACGTCTGCGGTAAGCTGTACAAGTTCAAACACTACCTAACCGACCACCTTCAGACGCACAAACCAGACTATGAGGAAACCGTCTTAAAGTTCAAGTGCCGATATTGCGGCAAGGGTTTCCGTTACCGGGGAAAGTGTGAGGTCCACGAAAAGCGGCATCAGGGCCACAAAGAAGTGATGTGCGACATATGCGGCAAAGCTCTGAGCACGGTCCGCGAGCTGGGCCTCCACATGCGCCGTCATACCGGGGAGAAACCGTACGTCTGTAGCTATTGCGGAAAGTCGTTCAGCCGACTGAACTCGTTGACTCTCCACGTGCGTGTTCATACGGGTGAGCGCCCATACACTTGTGACGAATGTGGGAAGTCGTTCACGCAGCACTCGAGCTACGCTATTCACAAGCGCCATCATACCGGCGAGAGACCATACTGTTGTTTGATCTGTCAGAAAACCTTTGTGTCTAAATCTTTGATGAAGTACCACATGAAGTCTCACGAAGAACACaaGTCCCCAAATAGTTTCTTTGTCGAACAATCTGAGGGAAAATCTAAAAGCTCCAAGGTTAACAGGAAAGCTTCAAACTCCATTTCTGGACCTATTAAGAGGAAGTTATCTAacaaaaagttaatcaaatgTAAAATTTGCGGAAACGAGTACAAACGCAATAGCACTCTGCAGAATCACTTGCTCATCCACGGTCAGGATTCCCACGAGTGCGACCTTTGTAACAAACCATTCAAGTCCGAGTGGCATCTAAAACAGCACAAGAAATACCACAGCAAAGCAAGACAGTACAAATGTGACATGTGTGGCTATGAGACGTGTATCAAGGGTAACCTCCTCTGTCACAAAAGGAAACACTTGAAACATTACATTGTCAAGTGTGATGCGTGTAATAAAGGCTTCTATAGGACATGTGATTACCAAGAACATGTTAAAATACACACAGGGGAGAAACCCCACCAATGCAACAAGTGCGGAAAGTCGTTCCCCGGCAAACACCGACTGGCCAATCACAAGAAAACCCACGAACCGGACTACGAAGAGACAGTTCTTCGTTTCAGGTGCAAGTTTTGTAACAAAGGTTTCCCCGGTCAGAGTCTGTGCACGAGGCACGAGAAACACCACCTGGGTGTTAAGGAGTTCATCTGCGACGTTTGCGGCAAAGCCCTTAGCTCGGCGCATGCAATGAGTCTCCACCTTCGCATCCACACCGGGGAAAAACCGTTTGTGTGTGACTTCTGCGGTAAGATGTTTGGTCGGTCATCTGCTCTCACTATGCACTTACGTGTTCACACGGGTGAACGTCCTTATGTGTGCAACGTGTGTGAGAAGGGGTTCACGCAGCCGTCGACGCTCACAATTCACAAGCGTTACCACACGGGCCAGAAACCGTATGAGTGTAAAACTTGTAACAAAACTTTTGTGACTAAAACTTTGATGAAAACCCATATGAAGACTCACATATCCACCAACACGATGCTTGGGACTTATATTTAG
Protein Sequence: MAKHNPDNQIKCDVCYKTCPSGFQLKQHLKIHETVKLYSCDMCSYASHVQVNLHAHRKRHFNDYKARCDVCNRGFYSMCSYKLHQAVHKDEMPFSCDVCGKLYKFKHYLTDHLQTHKPDYEETVLKFKCRYCGKGFRYRGKCEVHEKRHQGHKEVMCDICGKALSTVRELGLHMRRHTGEKPYVCSYCGKSFSRLNSLTLHVRVHTGERPYTCDECGKSFTQHSSYAIHKRHHTGERPYCCLICQKTFVSKSLMKYHMKSHEEHKSPNSFFVEQSEGKSKSSKVNRKASNSISGPIKRKLSNKKLIKCKICGNEYKRNSTLQNHLLIHGQDSHECDLCNKPFKSEWHLKQHKKYHSKARQYKCDMCGYETCIKGNLLCHKRKHLKHYIVKCDACNKGFYRTCDYQEHVKIHTGEKPHQCNKCGKSFPGKHRLANHKKTHEPDYEETVLRFRCKFCNKGFPGQSLCTRHEKHHLGVKEFICDVCGKALSSAHAMSLHLRIHTGEKPFVCDFCGKMFGRSSALTMHLRVHTGERPYVCNVCEKGFTQPSTLTIHKRYHTGQKPYECKTCNKTFVTKTLMKTHMKTHISTNTMLGTYI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -