Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010002144.1:111077-116642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4e-06 0.00082 21.8 1.4 3 23 234 254 233 254 0.97

2 14 8.9e-07 0.00018 23.8 1.0 1 23 260 282 260 282 0.98

3 14 2e-05 0.0041 19.6 3.8 3 23 290 310 288 310 0.97

4 14 0.00012 0.024 17.2 0.3 1 23 316 338 316 338 0.98

5 14 1.7e-05 0.0034 19.8 1.2 3 23 346 366 344 366 0.96

6 14 3e-05 0.0062 19.0 0.8 1 23 372 394 372 394 0.97

7 14 6.9e-07 0.00014 24.2 5.4 1 23 400 422 400 422 0.99

8 14 9.9e-05 0.02 17.4 1.5 3 23 430 450 430 450 0.99

9 14 0.0026 0.54 12.9 2.8 1 23 456 478 456 478 0.95

10 14 0.00069 0.14 14.7 6.8 1 23 484 506 484 506 0.97

11 14 1.1e-06 0.00022 23.6 0.1 1 23 512 534 512 534 0.98

12 14 8.5e-06 0.0017 20.7 0.1 1 23 540 562 540 562 0.98

13 14 6.5e-06 0.0013 21.1 0.6 2 23 569 590 568 590 0.96

14 14 0.00073 0.15 14.6 6.6 1 23 596 618 596 618 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4e-06	0.00082	21.8	1.4	3	23	234	254	233	254	0.97
2	14	8.9e-07	0.00018	23.8	1.0	1	23	260	282	260	282	0.98
3	14	2e-05	0.0041	19.6	3.8	3	23	290	310	288	310	0.97
4	14	0.00012	0.024	17.2	0.3	1	23	316	338	316	338	0.98
5	14	1.7e-05	0.0034	19.8	1.2	3	23	346	366	344	366	0.96
6	14	3e-05	0.0062	19.0	0.8	1	23	372	394	372	394	0.97
7	14	6.9e-07	0.00014	24.2	5.4	1	23	400	422	400	422	0.99
8	14	9.9e-05	0.02	17.4	1.5	3	23	430	450	430	450	0.99
9	14	0.0026	0.54	12.9	2.8	1	23	456	478	456	478	0.95
10	14	0.00069	0.14	14.7	6.8	1	23	484	506	484	506	0.97
11	14	1.1e-06	0.00022	23.6	0.1	1	23	512	534	512	534	0.98
12	14	8.5e-06	0.0017	20.7	0.1	1	23	540	562	540	562	0.98
13	14	6.5e-06	0.0013	21.1	0.6	2	23	569	590	568	590	0.96
14	14	0.00073	0.15	14.6	6.6	1	23	596	618	596	618	0.97

Sequence Information

Coding Sequence: ATGAAGACGTCGTCTTTAAATGTAGAACACAGTTTACATTGTAAAAACGAGAAAAATTTCAAAGTGACTGCACCTATAGAAGTAAACATCTCGAGTTCCATCCCTACCAACATGGTTAAAAAAGAGATTGACTGTGAACACAATCTCTTTTCAAAGAATGTCACTTGTTCTGAAATTGAGAACATGATGCCGTTAGAGTATGTTAAAGTAGAGATAAGTGATGACAATATTGACATCGAAACTAAGCATAATGTTATCAAGTTTACAACATTGTGTGAAGGGAGGAACAGTTGCAATGAAGGTTCCGGTTCTTATCTATCACCGGATAAATCTGAAATAACTCCAAAGATTGAAGAGGTAGATCAAGTAGTCACAGACGCTGCGCTTGGTGTAAAAGGGGTTCAGCGCAGAAGAGGCAGAAAGACATTAAAAATCAGATTAACAGAAAATTCAGCTTCAAAAGAACACACCAAATTAACTCTTGATAAATGTACCATCAGGACCAGGTCCAAAACCAACCCCAAACGAGAGCTCCCCATTGTGAAATATGTCGACACGATCGATGTCAAGAGAAGGACAAAGAAATGCAGCATCCTGGAGAACAAGACCAAAACTGCCATGACCCAACTCAACATGATATTCCAGAAAGAACTGGAGAAGTACAAGTTGACAACGTTCTCCGACGATGCAGACTCTGCGTGCCCTATCTGTAGCAAGATATTCTCCAACAAGAACCATCTCAACTCTCACATTAAACTCCACTCGGGTATTAAACCTCACAAGTGTGAGATCTGCACCAAGAGCTTTGCACGCAAGGGAGACTTGGCGATACATGTCCGACGTCACACGGGAGAACGCCCGTACGGTTGTGTCCACTGTCAGAAGACATTTGTGGAGAAGTCGCACCTGCTCCGGCACATCCGTAGTCACACTGGGGACAAGAGTCATGTGTGCACAGTCTGTGGTAGTGCGTTCACTGAGCGGGCAGGTCTTGTGAAGCACCTTCGCAGCCACACAGGTGAACGTCCACATCTTTGTCAGATCTGTGGGAAGGCGTTTGCTCAACGAGAATTCCTTGCTCGTCACAGCCGCACACACACGGGGGAGCGTCCCTTCTCTTGTCCTGTGTGCAGTAAATCCTTCTCGGACCGCTCGACGGCGGTGAAGCACACCAAGCTGCATGCAGGGCTACGCCCCTACACCTGCCCCATATGCAACCGTTGCTTCAGCCAGAAGCAGCACCTGACTGGTCACTTGCGAACCCATGCGGGGGACCGACCCTGGGGATGCAGCACTTGCGACAAGAAGTTTGGCCGtaaaagtgacctggtggtccattCGCGCCGGCACACTGGCGAGCGCCCCCACGCCTGTGAGGCGTGCGGGAAGACGTTCTTGGATCGCTCGCATCTTTCGAGACACTCCAAAGTGCACACGGGGGCCAAGCCTCACGTGTGCCACTTCTGCGGCCGGTGCTTCTCTGAGAAGGGTCACCTCGACGGGCACTTGCGGGTTCACACTGGTGAAAAGCCCTACGCATGTGACATTTGCCAACGATCTTTTGCGGATAGAGGTACACTTGTCAACCACATGCGGATACATACAGGAGAACGTCCCTTTGTCTGCGGGGTCTGCGAGAAGGCCTTTGCCCAGAAGGGGTCCTTGCTGAAGCACGAGAGGATCCACAGCGGGGAGCGGCCTTGGACTTGCTCATATTGTGGCAAGTCATTCGCGGACAAGGGCTACTTTGTCAAGCATTCCCGGCTCCACACGGGGGAAAACGTGCACACTTGCGACCTATGTGGGAAGTTCTTTGCCCAGCGTTGTCACCTGGTTAGGCATTCCAAGGTTCATGGAGGGGAGCGAACCGCAGATCTACCACCGGCCAATATGACCAGGAAAAATTTGGCCTAG
Protein Sequence: MKTSSLNVEHSLHCKNEKNFKVTAPIEVNISSSIPTNMVKKEIDCEHNLFSKNVTCSEIENMMPLEYVKVEISDDNIDIETKHNVIKFTTLCEGRNSCNEGSGSYLSPDKSEITPKIEEVDQVVTDAALGVKGVQRRRGRKTLKIRLTENSASKEHTKLTLDKCTIRTRSKTNPKRELPIVKYVDTIDVKRRTKKCSILENKTKTAMTQLNMIFQKELEKYKLTTFSDDADSACPICSKIFSNKNHLNSHIKLHSGIKPHKCEICTKSFARKGDLAIHVRRHTGERPYGCVHCQKTFVEKSHLLRHIRSHTGDKSHVCTVCGSAFTERAGLVKHLRSHTGERPHLCQICGKAFAQREFLARHSRTHTGERPFSCPVCSKSFSDRSTAVKHTKLHAGLRPYTCPICNRCFSQKQHLTGHLRTHAGDRPWGCSTCDKKFGRKSDLVVHSRRHTGERPHACEACGKTFLDRSHLSRHSKVHTGAKPHVCHFCGRCFSEKGHLDGHLRVHTGEKPYACDICQRSFADRGTLVNHMRIHTGERPFVCGVCEKAFAQKGSLLKHERIHSGERPWTCSYCGKSFADKGYFVKHSRLHTGENVHTCDLCGKFFAQRCHLVRHSKVHGGERTADLPPANMTRKNLA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450796;
90% Identity: iTF_01450796;
80% Identity: -