Basic Information

Insect: Timema monikensis
Gene Symbol: -
Assembly: GCA_902151445.1
Location: CABFVZ010000054.1:735426-741313[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.8e-05 0.0058 19.1 0.0 2 23 11 32 10 32 0.97

2 19 0.0023 0.48 13.1 2.2 1 23 77 99 77 99 0.98

3 19 0.27 56 6.5 2.1 1 23 105 127 105 127 0.92

4 19 2.7e-06 0.00055 22.3 4.2 1 23 133 155 133 155 0.98

5 19 0.0004 0.082 15.5 2.3 1 23 165 187 165 187 0.97

6 19 1.6e-05 0.0033 19.9 0.3 1 23 193 215 193 215 0.98

7 19 1e-07 2.1e-05 26.8 1.7 1 23 221 243 221 243 0.99

8 19 4.7e-06 0.00097 21.5 0.9 1 23 249 271 249 271 0.99

9 19 1.6e-05 0.0033 19.9 4.9 1 23 277 299 277 299 0.98

10 19 0.0019 0.38 13.4 4.9 1 20 344 363 344 366 0.96

11 19 0.0079 1.6 11.4 5.5 1 23 372 394 372 394 0.98

12 19 0.51 1.1e+02 5.7 0.5 3 23 400 420 400 420 0.97

13 19 0.016 3.3 10.4 0.4 2 23 427 448 426 448 0.90

14 19 5.3e-07 0.00011 24.5 2.2 1 23 454 476 454 476 0.98

15 19 0.083 17 8.2 1.2 1 23 486 508 486 508 0.90

16 19 6.1e-05 0.013 18.0 0.1 1 23 514 536 514 536 0.98

17 19 7.5e-06 0.0015 20.9 0.3 1 23 542 564 542 564 0.98

18 19 1e-05 0.0021 20.5 0.8 1 23 570 592 570 592 0.98

19 19 0.00018 0.037 16.6 1.0 1 23 598 620 598 620 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.8e-05	0.0058	19.1	0.0	2	23	11	32	10	32	0.97
2	19	0.0023	0.48	13.1	2.2	1	23	77	99	77	99	0.98
3	19	0.27	56	6.5	2.1	1	23	105	127	105	127	0.92
4	19	2.7e-06	0.00055	22.3	4.2	1	23	133	155	133	155	0.98
5	19	0.0004	0.082	15.5	2.3	1	23	165	187	165	187	0.97
6	19	1.6e-05	0.0033	19.9	0.3	1	23	193	215	193	215	0.98
7	19	1e-07	2.1e-05	26.8	1.7	1	23	221	243	221	243	0.99
8	19	4.7e-06	0.00097	21.5	0.9	1	23	249	271	249	271	0.99
9	19	1.6e-05	0.0033	19.9	4.9	1	23	277	299	277	299	0.98
10	19	0.0019	0.38	13.4	4.9	1	20	344	363	344	366	0.96
11	19	0.0079	1.6	11.4	5.5	1	23	372	394	372	394	0.98
12	19	0.51	1.1e+02	5.7	0.5	3	23	400	420	400	420	0.97
13	19	0.016	3.3	10.4	0.4	2	23	427	448	426	448	0.90
14	19	5.3e-07	0.00011	24.5	2.2	1	23	454	476	454	476	0.98
15	19	0.083	17	8.2	1.2	1	23	486	508	486	508	0.90
16	19	6.1e-05	0.013	18.0	0.1	1	23	514	536	514	536	0.98
17	19	7.5e-06	0.0015	20.9	0.3	1	23	542	564	542	564	0.98
18	19	1e-05	0.0021	20.5	0.8	1	23	570	592	570	592	0.98
19	19	0.00018	0.037	16.6	1.0	1	23	598	620	598	620	0.99

Sequence Information

Coding Sequence: ATGTCTCACTCGGGCATTGCTGTCATGATGGTGTGTGATGTGTGCGGGGAGAATTTCAGCAACCCGGCCGGGTTGATCTGGCATCGCAGGTTGCATAGCACTAGTAGAGAAGGTAGAACTACTAAAAAACCTGCCTCGTGTGAAGCCCCAAAGCCAAGTAACTCCTCACAAAAAGCTCCACATCCGATGGTGAGAGACCCGCGAAGAAGAGCCAGAGGACTGAAACAGCACACATGCGATATTTGCGGCTATTCCAGCAAGAGCAAGTCCTTTGTAGCCATGCACAGGAAGATGCACTACAACGAATACAAGTTCTATTGCAGGATATGCTCTAAAGGATACAACTCGGTTAAGTTACTTCACGACCACGAGTTTCTACACACCGGCGTCAAAGCTTTCCAATGTGACCAGTGCGGGAAAAGGTTTTCTTCCAGGCACAATTTAGAATCTCATAAAAAGCTTCACATACAAGATTTTGTGGATAACCCCAATTTCTATTGTGAATTTTGCGGTAAGAGTTTCCTGTACAGCAAGTCTCTGAGGAGGCATCGAGACATTCATTTGGGGGAGAATAAGTTTGAATGCGATATATGTGGTAAGATGCTGAACTCTAAGGAGTACATGAAGGTTCACTTGCGAATACACAAAGGAGATAAACCTTACGTTTGTGACATGTGCGGGAAGGCCTTTGTCACGAACAAGCACTTGACGATTCATCGACGCACACACACGGGGGAAAAACTCTATACCTGCGGTGTTTGCAACAAGTCATTCACGCAGGTTGGGTACTTGACGATACACAAACGCTCGCATACGGGTGAGAGGCCGTACCACTGTGATGTGTGCGGCAAAGACTTTGCCTCCAAATGTCAGCTAAATTCACATCGAAGAACTCATTTGAGCGTCAAgttaaaacatgtaaataattatCTACCCAAAGTACGGAAACGCAAGAGAGTCTCCACCGCGCCAGCAAATGTCCTGGGTTCTTCTATAGACACCCCTAGCAATTGGGGCAGGATCAAGATCTATAAATGCAACGTTTGCGGTAAAATCTGTAAGACTCTGTCCCTTCTCAGGGAGCACACATATTGTCACGTCACTGAAAGGTCCTTTTCTTGTGACTTGTGCAACAAGAAGTTCAAATCAAAGAAACGTGTTCACAACCACAGACAAGTGCACTTTAAAAAACACTGGTGTGATATCTGCGGGTATACCTCCGAGAAGAAAGTGTACATAGACACTCACAAAAAAATgcactataatatttacaaccTCTACTGCGGCATATGTTCGAAAGGTTTCAATACCGAGAAGTTGCTTCATATACATGAAGGGCTACACACCGGGGTGAAACCTTTCAAATGTGATGAATGTGAGAAAGCGTTcacttccaaatataatttattgaaacacaAGAGACTTCATGACCCCACGTACATAAACAGTCCAAAATACTACTGTGAGTTTTGTGATAAATCTTTCCTGTACGTTACTGTGCTGAACAAGCACAGGAGTGCCCATCTTGGCGAGAACAGGTTCGAATGTGACTTGTGCGGGAAGGTGGTCAACTCAAAGGCGTCCATGAGAACTCACCTGCAGGTTCACAGCGGAGAGAAGCCCTTTGTCTGTGATGTGTGCGGTAAGGCATTTTTGACGAACAAGAACTTGGTGGTGCATAGACGGACGCATACGGGGGAAAAGTTATACTCTTGCAGCGTGTGTGAAAAGTCGTTCACTCAGGTGGGCTATTTGAACATCCACAAACGTTCGCATACGGGTGAGCGGCCGTACCGCTGTGATGCCTGCGGAATGGACTTTGCTTCTAAGTGTCAGCTGATCTCCCACCAGAACATGCATTTTGCaaataacacattaattataaatactttgagctaa
Protein Sequence: MSHSGIAVMMVCDVCGENFSNPAGLIWHRRLHSTSREGRTTKKPASCEAPKPSNSSQKAPHPMVRDPRRRARGLKQHTCDICGYSSKSKSFVAMHRKMHYNEYKFYCRICSKGYNSVKLLHDHEFLHTGVKAFQCDQCGKRFSSRHNLESHKKLHIQDFVDNPNFYCEFCGKSFLYSKSLRRHRDIHLGENKFECDICGKMLNSKEYMKVHLRIHKGDKPYVCDMCGKAFVTNKHLTIHRRTHTGEKLYTCGVCNKSFTQVGYLTIHKRSHTGERPYHCDVCGKDFASKCQLNSHRRTHLSVKLKHVNNYLPKVRKRKRVSTAPANVLGSSIDTPSNWGRIKIYKCNVCGKICKTLSLLREHTYCHVTERSFSCDLCNKKFKSKKRVHNHRQVHFKKHWCDICGYTSEKKVYIDTHKKMHYNIYNLYCGICSKGFNTEKLLHIHEGLHTGVKPFKCDECEKAFTSKYNLLKHKRLHDPTYINSPKYYCEFCDKSFLYVTVLNKHRSAHLGENRFECDLCGKVVNSKASMRTHLQVHSGEKPFVCDVCGKAFLTNKNLVVHRRTHTGEKLYSCSVCEKSFTQVGYLNIHKRSHTGERPYRCDACGMDFASKCQLISHQNMHFANNTLIINTLS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446809;
90% Identity: iTF_01446809;
80% Identity: -