Tmon002682.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010000054.1:719062-728666[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0048 0.99 12.1 4.1 2 23 3 24 2 25 0.92 2 32 1.2 2.6e+02 4.5 7.8 1 23 30 52 30 52 0.92 3 32 0.00084 0.17 14.5 3.1 1 23 58 80 58 80 0.95 4 32 0.00023 0.047 16.2 1.1 1 23 86 108 86 108 0.95 5 32 0.00075 0.15 14.6 0.9 2 23 118 139 117 139 0.96 6 32 1.4e-05 0.0029 20.1 0.1 1 23 146 168 146 168 0.98 7 32 7.3e-06 0.0015 20.9 0.4 3 23 176 196 174 196 0.98 8 32 0.0013 0.26 13.9 0.2 1 16 202 217 202 219 0.92 9 32 3.1e-05 0.0064 19.0 0.8 3 23 251 271 250 271 0.97 10 32 0.0012 0.24 14.0 4.7 1 23 297 319 297 319 0.98 11 32 0.011 2.3 10.9 5.0 2 23 326 347 325 348 0.93 12 32 0.064 13 8.5 3.7 1 23 353 375 353 375 0.98 13 32 0.00069 0.14 14.7 5.0 1 23 385 407 385 407 0.96 14 32 1.5e-05 0.003 20.0 0.5 1 23 412 434 412 434 0.98 15 32 4.1e-07 8.5e-05 24.9 0.5 2 23 441 462 440 462 0.97 16 32 2.9e-05 0.0059 19.1 2.7 1 23 468 490 468 490 0.98 17 32 0.47 97 5.8 0.6 1 10 496 505 496 506 0.92 18 32 7.9e-05 0.016 17.7 0.0 1 23 579 601 579 601 0.98 19 32 9.9e-06 0.002 20.5 1.6 1 23 607 629 607 629 0.96 20 32 0.032 6.6 9.5 2.9 1 23 635 658 635 658 0.93 21 32 0.0012 0.25 14.0 4.9 1 23 664 686 664 686 0.97 22 32 0.0001 0.021 17.3 2.4 1 23 692 714 692 714 0.98 23 32 0.12 24 7.7 1.4 1 23 724 746 724 746 0.98 24 32 0.0011 0.22 14.1 0.5 3 23 752 772 751 772 0.97 25 32 5.5e-06 0.0011 21.3 1.2 2 23 779 800 778 800 0.96 26 32 7.6e-06 0.0016 20.9 4.6 1 23 806 828 806 828 0.98 27 32 1.7e-05 0.0035 19.8 0.2 3 23 836 856 834 856 0.98 28 32 0.0054 1.1 11.9 0.4 5 23 915 933 914 933 0.96 29 32 0.77 1.6e+02 5.1 1.1 1 21 939 959 939 960 0.93 30 32 2.2 4.6e+02 3.7 0.7 7 23 1001 1017 995 1017 0.81 31 32 1 2.1e+02 4.7 1.3 3 23 1055 1075 1054 1075 0.97 32 32 0.11 23 7.8 0.1 1 16 1081 1096 1081 1098 0.86
Sequence Information
- Coding Sequence
- ATGTGCTCGTGCAGCGTGTGCGGGATGAATTTCAAAAACCGCAAGAGTCTGAAGCTTCATTCTGCCGTGCATCACAAGGAGTTTAAGTATTTTTGTGACCATTGCAACTTTGTTACTTACAGGAAGAGCTACCTTCGCATGCACTGCAAAAACCACACAAGCAACTTTTCACATTTTTGCGACGTCTGCCATAAAGGTTTCCGCAACAAGGCCTCGTTACTGGAACACAAGCTCGTCCACACGGGACTGAAGCCTTATCTCTGCGATAACTGTGGTGAGTCGTTCACCACCAACCAGCGGTTGAAAGTGCACAAGCTGAGGCACGATGCTGACCACCGGCCAGAGTTGATCCAGTGTGGCGTTTGTCAGCGGTTGTTCACGTTCAGGAACAGTTTGAAGCGCCACATGGCCCAGCACACGGGCAACATGCCCAAGTTTGTCTGTGAGGTCTGTGGTAAGGTGCTGACATCCAGCCCCTCCCTCAGGGTGCACGAGAGGACACACAGTGGGGAAAAACCCTTCGGTTGTAAAGTTTGTGGCAAAGCGTTTGGCGGCAAGACCTACTTGCGTGTCCATATGCGCACCCACACGGGTGAACGGCCCTACTCGTGTGACCTCTGCGGTAAAACTTTCACCCAAAGTGCAAGTTTAGTAAACACAAGAACATCAATTGATTTGGTTAAACCTTTGAAGAAACTTTCTCCAAGACCTTTGAAGGCGACGAAAGATAATTTTACCGAAACAAGTTTGTGCAAAACTTGTGATAAGACATTTGCAACAAAGCGCCTTCTTATCCGCCACCAGATAGCACATGGAGACACGTATCCACATCCTTGCCCTGTTGAACACTTAAAGAAGCACATGGAATATCATTTAGTTGAAAAGAAGTTCGAGTGTGACATGTGTGGTTATACATTTAGTCGCCAGTCTTATTGCAAACTTCACAGAATGAGGCACTTGAAAGTTTTCACACTTCATTGCAAACAGTGCGGAAAAGGATTTCACACTCGCACAGAGCTACAAGGTCATGAAAATGTCCACCATGGCGGAAACAAGTTTGTTTGCCAAGTTTGCAAGCGGGTGTATCCGCATAGATATGTCCTAGAGTGTCATTTAAGGACGCACGAGACAGGCTATGAACGCAAGAAAAGGCACCAATGCGAGACCTGCGGTAAAACATATGCTTACAAAAGTTCACTCAATTTGCATAGTAAGCATCACTCCGGCCACACTTTTGTCTGCGACGTGTGCGGAAAGTGCGTGACTAGTCGCTGGTCACTGGTGACTCACTTGAGGATTCACTCTGGTGAGAAACCGTTGGTGTGTGATGTTTGTGGGAAGTCATTCACAAAGAGTACTGGTCTTAAAGTTCACCAACGAACACACACTGGAGAGAGACCGTACGTCTGTGACCTGTGCGGGAAATCGTTTACCCAGTGCTCGACGATGATAATTCACAAGCGGTACCATTCGGGGCTCAGGCCCTTTGAGTGTCCCAAATGTGGCAGGTCATACATACTAGGTAATATTTCTTTGAGAGATCAGAAGCGGGGCACAGACCTTTCCCTGTTATTTATAAAGAACTCTTCATCGCCAGTCGAGGGCAGGCCACTGCTGGCGAAAACAACGTTGTCTGAAGGTGATGGGTCGTCGAATAACTCGCTCGACTCTATGAATTCAAATGACGTGTACAAGCTCAAAACACACATGGAGATTCACAGAGGGGAAAAGAGATATGTGTGTACTGTGTGTGGGGTTGCGTTTGTCTTGAAGGCGTACTTGAACTCTCACATGCTTATCCACAGCGACGATCGTCCCCACGCCTGCGAGGTATGTGGCAAGCAGTTCAAACGTAAACAGCAGTTGAAACTCCATTTACTGATACACAAGAACGAAAGGAACCATGTTTGTGACATTTGTGGGTCTGCCTTCATCCAAAGGACTCAGTTGATTTATCACTGCAGGAGAAAACACACAAAGGAAACTACATTCCATTGCGACGTCTGTGGCAAAGGTTTCTACAACCGCAATCATTTCACAGATCACACTAATTTACACACTGGTTATTTCCCCTACAAATGCGAAGTGTGCGGCAAGTCTTACAAGGTGTACTCGAGTTTTCGGTATCACAAGGAAACCCACGTGACAAAGTCTGAGTCTGGGGAGATGTTCAAGTGCGAAACTTGTCTTGAAATATTCTCTACCAAACTCATTCTGACGTTACATAAGAGGAGGCATGCGCCCAAGCGGGCGTGTCGACTGTGCAACAAGCAACTGTCAAGTTCAGAGTCGCTCAAAGTTCACCTTCGCATACACGCCGGCGAGAAGCCTTGTATATGCGATGTTTGTGGAAAGAGGTTCGTGTCACGGCCGCTTCTGAGGATCCACCAGAGAACACACACTGGGGTAAAACCATACTCTTGTAACGTCTGTGGGAAGACGTTCACACAGCGCTGCACGCTGACGGTGCATAGAAGATATCATACCGGCGAAACTCCGTATGGCTGCCAAGTCTGCCCAAAGGCTTTTGTCTCAAAGAACTTGCTTAAGGCACATTTAAAAACTCATGAAAAACAAATGTCGAATGGGGCAGTTATTTTTGCTATGGAACAACTGTATTTCAACTCCAGCCTCTATTTGATTTGTGATTCACGAACACTTGATGGAGGCCACCAACAAGAATCAAACCAAGATACATTTGATCGTAATCAAGATGAAATGGGTCTTGAGTCTAATTATAAGATTTGCGGTAAAGCTTTCAAACACAATTATGCGCAGAAGATTCATGCTAGGATACACGAGGGTGTGAAAGATCATGTATGTGATATATGCAGTGCAGTGTTCCTCAGCAAAAACCACTtggacacacacaaaaagaGGTATTATAAATTCAACAAGTTCACTTTTGAGTTTTGCGACAAAGGTTTCATCCTGCGGTTTCATTATGATGATCACAAGAACTTACACACGGGAAACAAGCTGTTCAAGTGTGGGATATGGAGTAAATCGTACGGTGTGTCGTCAAGTTTGTACCATCACAAACGTTCGCACGTAGAAGGATTGGACCTTAACAACAACCGGTGTGAAACTTACGGCAAGCATTTCGCCAACAAACGGAGAATTGCAATCCATGTGCGGACTCACTCGGACAAGAGAATTTTGTGTGAGCTCTGCGGGAAAGCTCACTCAGGAACAGAGTCTTTGAAGATACACTTGCATATTCATGCTGGAGATAAGCCCTTTGTGTGTGATAGTTGCGGTAAGGCATTTGTGTCGCGGGAAGTGCTGAAAACTCGGACATCCATAATTCTACTCGGCAGCTCTGCTCGTGACCTTGAGAAAGTGATGATACATGTGGTGATCTTGCTAGCCATGCAAGTTTACCACATTGGCCAATCCTACGGGGAAAATGTCTACTAA
- Protein Sequence
- MCSCSVCGMNFKNRKSLKLHSAVHHKEFKYFCDHCNFVTYRKSYLRMHCKNHTSNFSHFCDVCHKGFRNKASLLEHKLVHTGLKPYLCDNCGESFTTNQRLKVHKLRHDADHRPELIQCGVCQRLFTFRNSLKRHMAQHTGNMPKFVCEVCGKVLTSSPSLRVHERTHSGEKPFGCKVCGKAFGGKTYLRVHMRTHTGERPYSCDLCGKTFTQSASLVNTRTSIDLVKPLKKLSPRPLKATKDNFTETSLCKTCDKTFATKRLLIRHQIAHGDTYPHPCPVEHLKKHMEYHLVEKKFECDMCGYTFSRQSYCKLHRMRHLKVFTLHCKQCGKGFHTRTELQGHENVHHGGNKFVCQVCKRVYPHRYVLECHLRTHETGYERKKRHQCETCGKTYAYKSSLNLHSKHHSGHTFVCDVCGKCVTSRWSLVTHLRIHSGEKPLVCDVCGKSFTKSTGLKVHQRTHTGERPYVCDLCGKSFTQCSTMIIHKRYHSGLRPFECPKCGRSYILGNISLRDQKRGTDLSLLFIKNSSSPVEGRPLLAKTTLSEGDGSSNNSLDSMNSNDVYKLKTHMEIHRGEKRYVCTVCGVAFVLKAYLNSHMLIHSDDRPHACEVCGKQFKRKQQLKLHLLIHKNERNHVCDICGSAFIQRTQLIYHCRRKHTKETTFHCDVCGKGFYNRNHFTDHTNLHTGYFPYKCEVCGKSYKVYSSFRYHKETHVTKSESGEMFKCETCLEIFSTKLILTLHKRRHAPKRACRLCNKQLSSSESLKVHLRIHAGEKPCICDVCGKRFVSRPLLRIHQRTHTGVKPYSCNVCGKTFTQRCTLTVHRRYHTGETPYGCQVCPKAFVSKNLLKAHLKTHEKQMSNGAVIFAMEQLYFNSSLYLICDSRTLDGGHQQESNQDTFDRNQDEMGLESNYKICGKAFKHNYAQKIHARIHEGVKDHVCDICSAVFLSKNHLDTHKKRYYKFNKFTFEFCDKGFILRFHYDDHKNLHTGNKLFKCGIWSKSYGVSSSLYHHKRSHVEGLDLNNNRCETYGKHFANKRRIAIHVRTHSDKRILCELCGKAHSGTESLKIHLHIHAGDKPFVCDSCGKAFVSREVLKTRTSIILLGSSARDLEKVMIHVVILLAMQVYHIGQSYGENVY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -