Tmon026303.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010001138.1:55773-57847[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 6.3e-05 24.7 0.1 2 39 16 52 15 56 0.89
Sequence Information
- Coding Sequence
- ATGGTTCGTCATAGGAAACGGAAAACAAATATGGGGTTATTTTCCGAAAATGATATGAGGGCAGCAGTTGATCTCGTATCCAAGGGAATGAGCTTACGTCAAGCAGCAGCAGCAAAGAATGTGAACTACGGAACATTGTTCAGatatgtaaaaaaagcaaaaacaaaTGAAGGATCTGAGATACGCATGTGTCCAAAGTACAATTCACGTcgtatttttacaaatgaacaAGAAGTTGCCTTGGTGTCATATTTAGTTCAGTGTGCAAAAATGTGTTATGGGTTGGATACTGTGGAAACTCGGCGTTTGGCATTTGAAATGGCTCAACACAATAGTCTTGAAATTCCTCCGAGCTGGTTGGAGAAGAAAATGGCAGGTATAGACTGGTTGTACAGTTTCAGAGATCGACATCCATGTCTCAGTCTTCGACGACCTGAGCCCTGTAGTTTATCAAGGGCAACTTCCTTCAATAAACACAatgttggaattttttttgaTAACTTGAAAGATGTCCTATCTCGCACCACTAACTTCAGTGATGGTACCaggatatataatttagatgaaaCAGGTACCTCGACAGTACAAACACCAAAACGGATTATCGCTCCGAAAGGTATCAAACAATTGAATAAGGCTACAAGTGGTGAGAAGGGCACACTCGTCACTACTTGCTGCATTGTCAGCGCGTCTGGTGTTGCACTTCCTCCTGTAATGGTATTTCCAAGGGTTCACTTTAAGGAACACATGATCAAAGGTGCACCCCCAGGAACCCTAGGACTTGCTACGCCATCTGGATGGATGAACAGTAGTCTTTTCCCGGAGGTAATGCAACATTTTGTAAAGCATTCTCATTCTTCAAAAGAAAATCCATCACTTCTAATTTTTGACAACCATGAAAGCCATCTTGCTTTAGCAGCCTTAGAAATCGCCAAGGAGAATGGAGTGACTCTACTGACGATTCCACCTCATTGCAGCAATAAAATGCAGCCTCTAGATGTAAGTGTATTCCATTCATTTCAGTCTCACTATGACCGTGCCATAGAATCATGGCTGTTGCACCATCCTGGTATTCCACTCAATATTTACCAAATTGCAGAATGTGTTGGGAAAGCTTTTGAAAAATCCATGACACCATCAAATATCATATCTGGTTTTAGAAAGACAGGTATATTTCCCTATGATTCAGATGTgtttaatgatgatgattatctTAGCAGTGCTGTGACAGACCGCCCAGAAGATCAAAATGAAATGCTTGCAATTGATAACTCATTGTCTTGTACGTCAGGGGAAGGTAATATAATCATAAGTGAAACAGTGGTATTAAATGgggaaacagaaaataaacagATTTCTCAGATTCCTACACAAGTCATCAGCCCTGAAATGTTTCGTGGATATCCAAAGGCAGAAAGTAGAAAACCTTGCAACAAAAGGAGAAAGGGAAGAAGTTGCATTCCAACAGATACACCGGTAAAGGAAAGCTTGGTACAACGTGCACAGCAAAGAAATGCTAAGAAAAAAACCAAGGTAGAAAAGAAAGcatcaaaaaaattgtataaagaaGAATTGGACACGACAGACGACGAAGATAATTCTCCAGTCTTAACATCCTCCGAAGATATTAACTGTCTTGAAGAAGATGATGAACCTATTGCAGAAACTCGAGAACCAAAAGTTGGTGATTATGTATTGGTCAAGTTTTCAGggaaaaaattagtgttttatgttgggaaaattataaaacagaaaGATGAGGATGGTGATTTTGAGATCAGCTATCTTAGAAAATCAGTAAAGGATCCCAGAAAGTTCATGTTTCCAGTTGAGCCAGATATAGCATCTGTAGCAGAGACAGATATAACAATGGTGTTACCACAACCTCTAATTGCAGGTCAAACTAAAAGATTAAAatcatatctttattttggCGTTAATATGGATAACCTTAACGTACATTAA
- Protein Sequence
- MVRHRKRKTNMGLFSENDMRAAVDLVSKGMSLRQAAAAKNVNYGTLFRYVKKAKTNEGSEIRMCPKYNSRRIFTNEQEVALVSYLVQCAKMCYGLDTVETRRLAFEMAQHNSLEIPPSWLEKKMAGIDWLYSFRDRHPCLSLRRPEPCSLSRATSFNKHNVGIFFDNLKDVLSRTTNFSDGTRIYNLDETGTSTVQTPKRIIAPKGIKQLNKATSGEKGTLVTTCCIVSASGVALPPVMVFPRVHFKEHMIKGAPPGTLGLATPSGWMNSSLFPEVMQHFVKHSHSSKENPSLLIFDNHESHLALAALEIAKENGVTLLTIPPHCSNKMQPLDVSVFHSFQSHYDRAIESWLLHHPGIPLNIYQIAECVGKAFEKSMTPSNIISGFRKTGIFPYDSDVFNDDDYLSSAVTDRPEDQNEMLAIDNSLSCTSGEGNIIISETVVLNGETENKQISQIPTQVISPEMFRGYPKAESRKPCNKRRKGRSCIPTDTPVKESLVQRAQQRNAKKKTKVEKKASKKLYKEELDTTDDEDNSPVLTSSEDINCLEEDDEPIAETREPKVGDYVLVKFSGKKLVFYVGKIIKQKDEDGDFEISYLRKSVKDPRKFMFPVEPDIASVAETDITMVLPQPLIAGQTKRLKSYLYFGVNMDNLNVH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448472;
- 90% Identity
- iTF_01448467; iTF_01448468; iTF_01448469; iTF_01448470; iTF_01448471; iTF_01448472; iTF_01448476;
- 80% Identity
- iTF_01448476;