Tmon047253.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010003624.1:10725-11120[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-08 1.3e-05 26.9 0.0 8 39 4 36 1 40 0.89
Sequence Information
- Coding Sequence
- ATGAAAATAGCCGTAGAGAAAGTTTTAAGTAACACTATGACAGTGAGACAGGCGGCAAATACATACGCTGTTCCTAAAAGCTCTTTAGGAGACAGAGTGGCGAAGTTAAAATTAGGAAATGAAGTAAAAATAGGTTCTGACATGGGGCGATTCAAACCTACTTTCTCAGAAAATTTTCAAGAAGAACTTGTAGTACACATTAAAGAGCTTGATAACCGTTTGATGCCACTGAGTTGTGGGGAGTTTGGGAAGTTGGCTTTCGATGTGGCCGAGGCCTTGAAACTTCATCCTCCACTTAACAAGGAAAAGAAGTGTGCTGGCAAGGACTTCTATGATTTTATGAAACGACACCCTGAAATCACATTAAGAACCGCTGAATCTACTATAATACAATGA
- Protein Sequence
- MKIAVEKVLSNTMTVRQAANTYAVPKSSLGDRVAKLKLGNEVKIGSDMGRFKPTFSENFQEELVVHIKELDNRLMPLSCGEFGKLAFDVAEALKLHPPLNKEKKCAGKDFYDFMKRHPEITLRTAESTIIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450427; iTF_01446435; iTF_01446437; iTF_01448404; iTF_01450457;
- 90% Identity
- -
- 80% Identity
- -