Tmon047267.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010003625.1:61346-63929[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-10 5e-07 31.4 0.1 1 39 15 53 15 59 0.89 2 2 5.6 3.1e+03 0.1 0.1 13 25 55 67 51 67 0.79
Sequence Information
- Coding Sequence
- ATGCCGCGCCATTACGAAAGAAAAACGAATAGGGCGAGTTGGACTGAAGAAAGTATGTCAGGAGTTATACGAGAAGTTTTACAAGGGAAAATGGGTTACAAGAGAGCGTCACAAGCTTATGGTGTTCCCCAGACAACATTGGAGTACAGAATTAGAAAGGCccgaaaaaaaagtttgtctccCCAAAAAGCTGCCAAAAAGAGGTTAGGTCGTTATACAATGGTCTTCACTATGGCACAAGAAAATGAACTAGTGGACTACATATTGCGCCTTGAAGAAAGGCTGTTTGGTCTTACCTTGATTGACGTTCGTGAACTAGCGTTTCAGTTAGCAGAAAGCAATAACATTCCGAACTCAttcaataaagagaaaaaaagagcaGGGAAGGATTGGGTTTATGGATTTTTAGACAGGCACAAAGAACTCTCATTGAGGAATCCAGAAAAAACATCAATTGCACGTGCAAAGGGCTTCAACCGCGTGTCTGTTGGGAAGTTTGATGATCTCCTAGAATATCttaatgaaaaatacaaattctCTCCAAATGATGTGCCGGTTCCTAAAGAAAACGAAAAGCCAGAAAAGAAAGACAACAGAAAACGAGggaaaacagtaattttgactTCAACACCTTATAAATTAGAACTTGAAGAAGAATTTGCCAAGCCTAAGAAAACAatcaagaaaagaaaactttttgaaGACAAGCAAAATGGACCAGAGGAAGAAGATCAAACCACAGGCAGACCAAAAATAAGAACAGGAAAGAAGCAAACAAAAAAGAAGCACCAGGAAGAGTGGTCATCCTCCGAAGATGAAGAGTGGTCGCCTTCTGAAGATGAAGATGGTATGGATGCTGCCTGCATGTTTTGCAACGAGCTGTTCATGCACTCAAGATCAGGAGAAGGCTGGATACAGTGCTCGGTGTGCAGCGAATGGGCTCATGAAGCCTGCAGTGGGCATGACCTAGATGAAGAATACAATTGTGATTTTTGTACTAAAGTTTCTAAACAAATTCGCCTTAAATAG
- Protein Sequence
- MPRHYERKTNRASWTEESMSGVIREVLQGKMGYKRASQAYGVPQTTLEYRIRKARKKSLSPQKAAKKRLGRYTMVFTMAQENELVDYILRLEERLFGLTLIDVRELAFQLAESNNIPNSFNKEKKRAGKDWVYGFLDRHKELSLRNPEKTSIARAKGFNRVSVGKFDDLLEYLNEKYKFSPNDVPVPKENEKPEKKDNRKRGKTVILTSTPYKLELEEEFAKPKKTIKKRKLFEDKQNGPEEEDQTTGRPKIRTGKKQTKKKHQEEWSSSEDEEWSPSEDEDGMDAACMFCNELFMHSRSGEGWIQCSVCSEWAHEACSGHDLDEEYNCDFCTKVSKQIRLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448388;
- 90% Identity
- -
- 80% Identity
- -