Tmon036351.1
Basic Information
- Insect
- Timema monikensis
- Gene Symbol
- -
- Assembly
- GCA_902151445.1
- Location
- CABFVZ010002053.1:81224-82502[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.003 1.6 10.6 0.1 1 21 14 34 14 34 0.95 2 2 1.9e-15 1e-12 49.6 0.2 1 43 49 92 49 94 0.93
Sequence Information
- Coding Sequence
- ATGGGTGTCGATATCcccaaattaaatatcaagtcGTGGACTGAGGACAGTCTCAACAGTGCATTGGGGGCTCTCAGATCTGGCGCCATGTCTGCTAACAAAGATTATGTTCAGGACAAACTTCTGTTCAACATGGTCTGGTGGTCAGAAGAGTCAATGGACGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAAACACGCAGCAAGTCACTACAAGCTCTCGTATTCTTCCTTGCATGGTAGACTCGGAAGGAACAAATACCAAGCTAATAACTCCCCCTCTCGACAGCAGTATGTACTCCTCAGCGTGAGTCGAGAACAGACTGTACTACTAGGATATCATCGCAGAGCATCTTTTCTGGTCTGGTTTCAAGAATAG
- Protein Sequence
- MGVDIPKLNIKSWTEDSLNSALGALRSGAMSANKDYVQDKLLFNMVWWSEESMDEALEAVRVGQMSIKHAASHYKLSYSSLHGRLGRNKYQANNSPSRQQYVLLSVSREQTVLLGYHRRASFLVWFQE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -