Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010002971.1:36779-38506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5 2.8e+02 4.2 1.0 3 23 127 149 125 149 0.92

2 9 4.8 9e+02 2.6 0.4 1 23 165 189 165 189 0.92

3 9 0.074 14 8.3 0.4 1 23 227 251 227 251 0.97

4 9 2.5 4.7e+02 3.5 1.4 5 23 268 286 263 286 0.83

5 9 0.97 1.8e+02 4.8 0.1 3 19 294 310 294 310 0.97

6 9 0.26 49 6.6 0.1 2 23 324 345 323 345 0.96

7 9 0.057 11 8.7 2.8 1 23 349 372 349 372 0.96

8 9 0.013 2.3 10.8 7.2 1 23 378 400 378 400 0.98

9 9 0.00045 0.085 15.3 3.7 1 23 426 449 426 449 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5	2.8e+02	4.2	1.0	3	23	127	149	125	149	0.92
2	9	4.8	9e+02	2.6	0.4	1	23	165	189	165	189	0.92
3	9	0.074	14	8.3	0.4	1	23	227	251	227	251	0.97
4	9	2.5	4.7e+02	3.5	1.4	5	23	268	286	263	286	0.83
5	9	0.97	1.8e+02	4.8	0.1	3	19	294	310	294	310	0.97
6	9	0.26	49	6.6	0.1	2	23	324	345	323	345	0.96
7	9	0.057	11	8.7	2.8	1	23	349	372	349	372	0.96
8	9	0.013	2.3	10.8	7.2	1	23	378	400	378	400	0.98
9	9	0.00045	0.085	15.3	3.7	1	23	426	449	426	449	0.97

Sequence Information

Coding Sequence: ATGACCATTGGAGATGAAACAATGCCTGATACGCTTCCATCCGATCTGATTAGGGATATTATTGGAGTTGATGAGTCTGAAATGAGTTGTGCTTTGCCAGAGAGGAGCGAGGACTTTGATGACTTCCTTTACGCGGGATATAAATCGTTGTCTTTGAAAACAGCCGAAGAATTAGTTAAACCAGTGGATACATGTGGAGTCGATTCAACACAAGAATCACCTTCTCTAGGCAAGGTTTCAGACGTAATACAAGTGGGTGGTCTTTCAACAACGGAAAACCAATCGTCTAAAAATATTCCACGACCACCCGAGATGAGATTTACCCTGAACTATGGCGAGCCTTCTGCTGAATCAAATGAAATAGAGGTGAAGATTAGTTGCGAATGGAAACTTTGCAGTTTTGTCTGCACAAAATTCAAGTATTTAGTAGAACACATCGCTAAACATACAAACCATCGACGGCTAAGATCGAATGAGGGAGGTGAAAGCTTCTACACCTGCCGGTGGATGAACTGTGAAGCCCGGATTGAAAGCCGCGAAGAAATGACACGACACCTGTACTTCCACGCCTATCATAAACATCTCAGTCACAAAGGGTCGTGGATAATCCGCAGTTCACGCGGACCACGTTGCAAAATAATTGGAACCAAATTCTCCTTCCCTGATCTAAAGACACCTTTCGAGTGTTCATGGGAGAATTGCGAGCAGACGTTCGACAACCCCTTCGTCTATTTTTCCCACGTGAATAAACACGTCTGGAACATCCCTCGGGGCCTCTCCGGGGTGAATTGCCGTTGGAGAGGGTGCTCCTCCAGAATACGGAACTTCTACAAACTTAAAGAGCACTTGAAAACGCATACGCGTGAGAAGAAGGCGGGCTGCCCGAGATGCGGCGTCCTATTTGCTACCAACAGGAAGCTCTTGGAGCACTGTGAGAGGCAGCTTCCCACCACGGAGATGAAGGAGAACCAGTGTCTGCTGTGCTTCAAGGTCTACCCATCCCCCGGAATCCTAAGGGACCACGTGAAGCTTCACGTTCGCAGGCACAAGTGCGGGTTCTGTGGGAATATGTGCGTCAATGCCACCACCTTGGCACAGCACGTGAAATATAGGCACCAGGATGGAAGACCGTACCGGTGCGACCGCTGTAGCCACGCCTGCAAGAGCAGAAGTGATCTGAAGAAACACTTCCTCAGGCACCAGAGGACGGAAGGGAGCGTGTCTCTCCCTAGGCCTAGGGGGAAACATCGCGGGGTTGACGACGGCGTGTCTCTGTTCAGTTGTCACCTTTGCTCGAAGAGGTATCGGAGAGGTAGCATGCTATCTGTCCATCTTAGGAAGCAACACGGGATAGAAAGGCCCTCCGATATGAGCAGGCTAACTTACAGGAAGGAAGACGATGGCTTCTTCAGGCTCATACGTGAGGACTTCGTGTGCGTCTTAGAGGTTGGAAGTACGGGGGAATCTTTGGAGTGTGGGGAGGAAGGCTCTGAAAGTATAGCTGTGTGTCCTACCAAACAAGTTCAGCCCGACACGCCAAGAGACAATGAACTATATACAAGACGAACAACAACCCTGTTGGAGACGGGGCCATGTCGAGCAAACAAGAAGAAGAGTAATGTGGTCTATGACATTGGGGAAATCAACGAGACTATTTGGCTTTCGTGTAAGAAATCGAAAAGTGTCAGCGTAAGTAAAACAGAACGTTCACTTCTGAGTTCCCTTTAA
Protein Sequence: MTIGDETMPDTLPSDLIRDIIGVDESEMSCALPERSEDFDDFLYAGYKSLSLKTAEELVKPVDTCGVDSTQESPSLGKVSDVIQVGGLSTTENQSSKNIPRPPEMRFTLNYGEPSAESNEIEVKISCEWKLCSFVCTKFKYLVEHIAKHTNHRRLRSNEGGESFYTCRWMNCEARIESREEMTRHLYFHAYHKHLSHKGSWIIRSSRGPRCKIIGTKFSFPDLKTPFECSWENCEQTFDNPFVYFSHVNKHVWNIPRGLSGVNCRWRGCSSRIRNFYKLKEHLKTHTREKKAGCPRCGVLFATNRKLLEHCERQLPTTEMKENQCLLCFKVYPSPGILRDHVKLHVRRHKCGFCGNMCVNATTLAQHVKYRHQDGRPYRCDRCSHACKSRSDLKKHFLRHQRTEGSVSLPRPRGKHRGVDDGVSLFSCHLCSKRYRRGSMLSVHLRKQHGIERPSDMSRLTYRKEDDGFFRLIREDFVCVLEVGSTGESLECGEEGSESIAVCPTKQVQPDTPRDNELYTRRTTTLLETGPCRANKKKSNVVYDIGEINETIWLSCKKSKSVSVSKTERSLLSSL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450108;
90% Identity: iTF_01450108;
80% Identity: -