Tgen031529.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002870.1:8592-15835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5e-05 0.0094 18.3 0.1 1 21 116 136 116 137 0.95 2 13 0.013 2.5 10.7 6.9 1 19 140 158 140 163 0.90 3 13 3.7 7e+02 3.0 1.0 1 10 195 204 195 215 0.63 4 13 0.0016 0.29 13.6 1.7 1 23 220 243 220 243 0.94 5 13 0.019 3.6 10.2 2.8 1 23 250 272 250 272 0.98 6 13 0.001 0.19 14.2 2.5 1 23 278 300 278 300 0.95 7 13 0.082 15 8.2 1.7 1 23 306 328 306 328 0.98 8 13 2.7 5e+02 3.4 4.9 1 23 334 357 334 357 0.96 9 13 1.1 2e+02 4.7 0.1 1 23 385 407 385 407 0.94 10 13 0.0099 1.9 11.1 7.1 1 23 413 435 413 436 0.96 11 13 0.031 5.8 9.5 0.7 1 23 441 463 441 463 0.99 12 13 0.00099 0.19 14.2 2.8 1 23 469 491 469 491 0.98 13 13 2 3.7e+02 3.8 4.3 1 23 497 520 497 520 0.96
Sequence Information
- Coding Sequence
- ATGTTGGAGAGGAGGGTGAAGCTAAGTTCCTCTTACAAGATGTCGGACAAGAACTACTCCCCAAGGAGTTTGATTGTAAAGCCGACACTTCATAATGGCACTCACAATTACGCTCATATAAATGACGACGTCAATGAGTTAGAAGACTCACATCAAGATGACACTTTTCTTGAAGAAGATGCAAAGGTCAAATTGTTTGGTTGGGAGACCTGCGCAGAGCAACACGACCAAGCACCAGAGAATTGTGTAAAATGTGGTTTCACAGTGTCACCAAAGGATTCCTCAGTCCAAGTGGTCACAGTTCGGCCCAGACACAAAGCAGAAGCCAATGAACAGTCAATCGAGTATGCTTGTAACATCTGTGACAAGTCATTCCCACGCGTTGGTCTCCTCACATCTCACCTCAAACTAAACATCTTCAAATGTCTCATCTGTGGCATCTGTTTTAAGAAGAAATCCAAACTGGACAGACATTGCAAAGAGTTCCATTGTGAAGTAGTCATCCCAACATTTCCTTTGTACTGTCCTTCAGAAAATACCCATAGGAAGAATCACCACGGTCAGCACAGATCTAAACTCAGACATAAGTGTAATATCTGTGGCGCCGAGGTTCGGTTTCTTAAGGCTCATCTGGAAATACATTCCAATGACCCTCGTTACCAGTGCGAATCTTGTGGAGCTTGTTTTACCACAAAGAACGCTCTAAGTGGCCACAAGTATAAAGCTCATTCAAAGAAGGACAACAATTATTGTTGTGACCAGTGTGGAAAGTTGTTTGGTTCGTACGATAGACTGGACAGTCACAAGAGAAGTCATTCAGGTAATCGTGACTTTTTATGTGACAGGTGTGGCTTGGCTTTTATTTTCCACACCAACTTCCGACGCCACATGTTGAATCACGAGGGCCGTAAGTTGTTCAAGTGTTCCTTTTGTACCTATGTCGCATACCAGATGAAGAGTCTTGATCGTCACTTGCTCCGCCACAAAGGAAATGAACCGTACATTTGTCTCCAGTGCGGGTTCCGTACGGCCCACCATCACGTCTTGAATCTCCACAAGAAGTCGGTACACTACAAAGCTAAAGTCACTCGAAATAGAATGTCTGTAAAGTGGAAACAGGTCAATCGAATCCCGGTTGAAAAGCAACCATTTTACAATTGTGATCTCTGCGACTACATGTCTGTGAACCTCATTGGAATCAAAGAGCATAAGTTGATCCACACTGGGGAAGGTCAGTATAAATGCAACGAGTGTAAGTTTACTTGTAGTCAGACAGCTCGGTTCATAAAGCACATGAACAGTCACCACGGGAATGGAAAGTATCAGTGTGACTCGTGTTCATTCAGTGTGAACCAGATTACATTCCTCAAGGAGCATATTAAGGTTCATGACGACGTCCGTCCATTTTCCTGTGAAAAATGTGGCTTTGCTTGCAAAACTGAGAACTTCCTAAATAAACATCAGCTTGTTCACGGTGATGTGAAAGCGTTTGAGTGCTCTTTATGTCACAAGAAGTGGCTCAAGAAGCGAGAACTAACGAGACACGTCAAGAGAAAGCATCCAGAACATTTCGATATAAACGATCGGGAAAACAATAAATTGAACCAACATGTCGGCTCGTCCTATTTAAATGGACAACTAAACAACAAGTCCGCCAACTTAAAGAAGCGCTTGAAGGAGAAACATCACAGCTATAAAGTGTTGAACAGGCTGAACGGCAAGAGAGGGAACATAAGAGGACAAGTCGAAGGAAACCATTCAGCTTCTACAACTTTGTTCAGTCAGGCCAAACCGAGCGGTTCCAAACGGCAGCCGCATGAGTGGCGCACTCTGCCGCACACGCTAAAGATACCTGCGCATCCAACAATGTGTCGCCAGTTGCCTAATTTGTTTGGTAGGCAATCCTCGGCTCCCAACAACACcaaagtcatcatcatcatgtcaGGGAAGAATAAAATGCAGCGTCGTTGCTTACAAATCCAAGGTACAGAAGTGGGACAGTCGTTCCCTGCTCTACAACTGAACCAGACACTCAAGGAAGACCCAAACTAA
- Protein Sequence
- MLERRVKLSSSYKMSDKNYSPRSLIVKPTLHNGTHNYAHINDDVNELEDSHQDDTFLEEDAKVKLFGWETCAEQHDQAPENCVKCGFTVSPKDSSVQVVTVRPRHKAEANEQSIEYACNICDKSFPRVGLLTSHLKLNIFKCLICGICFKKKSKLDRHCKEFHCEVVIPTFPLYCPSENTHRKNHHGQHRSKLRHKCNICGAEVRFLKAHLEIHSNDPRYQCESCGACFTTKNALSGHKYKAHSKKDNNYCCDQCGKLFGSYDRLDSHKRSHSGNRDFLCDRCGLAFIFHTNFRRHMLNHEGRKLFKCSFCTYVAYQMKSLDRHLLRHKGNEPYICLQCGFRTAHHHVLNLHKKSVHYKAKVTRNRMSVKWKQVNRIPVEKQPFYNCDLCDYMSVNLIGIKEHKLIHTGEGQYKCNECKFTCSQTARFIKHMNSHHGNGKYQCDSCSFSVNQITFLKEHIKVHDDVRPFSCEKCGFACKTENFLNKHQLVHGDVKAFECSLCHKKWLKKRELTRHVKRKHPEHFDINDRENNKLNQHVGSSYLNGQLNNKSANLKKRLKEKHHSYKVLNRLNGKRGNIRGQVEGNHSASTTLFSQAKPSGSKRQPHEWRTLPHTLKIPAHPTMCRQLPNLFGRQSSAPNNTKVIIIMSGKNKMQRRCLQIQGTEVGQSFPALQLNQTLKEDPN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446066;
- 90% Identity
- -
- 80% Identity
- -