Tgen044073.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- ZNF296
- Assembly
- GCA_902155825.1
- Location
- CABFWO010005636.1:23737-44702[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.021 3.9 10.1 4.4 2 23 144 165 143 165 0.97 2 9 1.9e-06 0.00035 22.8 0.5 1 23 171 193 171 193 0.96 3 9 0.011 2.1 10.9 1.2 1 23 199 221 199 221 0.97 4 9 6.3e-05 0.012 18.0 0.3 2 23 228 250 227 250 0.96 5 9 9.2e-05 0.017 17.5 1.7 1 23 256 279 256 279 0.96 6 9 9.4e-05 0.018 17.4 0.4 1 23 286 308 286 308 0.98 7 9 0.49 92 5.8 1.3 1 23 314 337 314 337 0.93 8 9 0.00088 0.16 14.4 5.9 1 23 342 364 342 364 0.96 9 9 0.00034 0.064 15.7 4.6 1 23 370 393 370 394 0.96
Sequence Information
- Coding Sequence
- ATGCTGCAGACGGGGGACCCCCACTTTTTCCCGACAAAACATAGATTACTGTACAGGGATTTATCTGCCCGTCCAGTCCGGTCAGAAGTTTCCTGGAGGTCGTGGAGGTCCTGTATGGGTTTGAGTGACTTGAGTCACAGTGACGCAGACAGAGATGTGTCATCAGAAGAGAAATCTGTCACCGAGACACACACTCCTGAGGATGAGCCAAGGACAGGTGAATCTTTTGTTGGACCAACCCCGTGGCCTTTGAAGGTCAATTCAGAGACGGCTAAGGGGGAATTCAAAGGAGGGCAGAGATGGGTAATGGATGGGGAACATGGCGCACATGTGGAACCGATAGAACAACCGGCGTTATCCCGGACGGTTCGTAAATGTTGGCCAACCAGTGGTCTCAAGAGGAGGAGAGCTTATGGTTATCGTCAGCTCTACTGCTCTCATTGCCCGTTTCACACAACTATCAAGCTGCTGCTGGAAAGACACATGCGCAAACACCCCAGAAGGAAAGTGTATTTGTGCAGCATTTGCGAGAAAAAGTTCCCTCAGTCATCTGGGCTCAAAATTCATATTAAACGTCACTTGAACCAACGTGATTTCCCATGCAACTATTGTGAATACCGGGCATACACCAAGATGGACAGGACTCGGCACATGACCATACACACCGGGGAGCGTAACCAGGTGTGTCAGTTCTGCGGCAAGGCCTTCGCCAAGGACTCGACGCTCAGAGAACATGTGCGCTCTATTCATGAACGAGAGCAGAaacacatttgcttggagTGTGGGTTCACGACATATCGCTCCAACAATCTGCGTGTACATATTCGCATGCGGCACCAGGGCGAGTATAATAACCACgtgtgtccagtgtgtggagCACGCGTGAAGCAGCGCACTGCCTTCTTGGAACACATGCGTTCACACACAGGAGATCGGCCATTTAGgtGTGACCAATGTACGGCCTCATTTGCATGTGTTGCACGTCTAACAGTCCACCGCAAGTCCGTTCATGAGCCTCGTCAATACAAGTGTGATCAATGTCTGAAGACCTTCCAGACCAAACACCATCTTCTGAGACACGCTTTCATTCACACAGAGAACAAACCTTTCTCCTGTCCATACTGCAAGTACTCGTGTAATACTCAGGGAAACATCACAAAACATGTCAAGTCCGTTCATCACAAGACCGACTTCTCCTACCGCAAGTAA
- Protein Sequence
- MLQTGDPHFFPTKHRLLYRDLSARPVRSEVSWRSWRSCMGLSDLSHSDADRDVSSEEKSVTETHTPEDEPRTGESFVGPTPWPLKVNSETAKGEFKGGQRWVMDGEHGAHVEPIEQPALSRTVRKCWPTSGLKRRRAYGYRQLYCSHCPFHTTIKLLLERHMRKHPRRKVYLCSICEKKFPQSSGLKIHIKRHLNQRDFPCNYCEYRAYTKMDRTRHMTIHTGERNQVCQFCGKAFAKDSTLREHVRSIHEREQKHICLECGFTTYRSNNLRVHIRMRHQGEYNNHVCPVCGARVKQRTAFLEHMRSHTGDRPFRCDQCTASFACVARLTVHRKSVHEPRQYKCDQCLKTFQTKHHLLRHAFIHTENKPFSCPYCKYSCNTQGNITKHVKSVHHKTDFSYRK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -