Tgen012130.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000672.1:230231-231862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 19 7.9 1.6 1 23 52 75 52 75 0.94 2 11 4.8e-05 0.009 18.4 3.6 1 23 140 162 140 162 0.97 3 11 0.00021 0.04 16.3 1.6 1 23 175 198 175 198 0.98 4 11 1.5e-05 0.0028 20.0 5.4 1 23 245 267 245 267 0.99 5 11 0.00098 0.18 14.3 7.7 1 23 329 351 329 351 0.99 6 11 3.2e-05 0.006 18.9 1.0 2 23 358 380 357 380 0.95 7 11 3e-05 0.0055 19.0 0.8 1 23 386 408 386 408 0.98 8 11 0.00017 0.033 16.6 4.5 2 23 415 436 414 436 0.94 9 11 0.0022 0.41 13.1 4.3 1 23 442 464 442 464 0.96 10 11 0.0016 0.3 13.6 2.7 1 23 470 492 470 492 0.96 11 11 5.1e-06 0.00096 21.4 1.2 1 23 498 520 498 520 0.98
Sequence Information
- Coding Sequence
- ATGGAATTCAAAACTTGCCCTGAAAAGAACTCCAAGAAACTGATCCCCCACAATTGTTCTTCCAGGTGGCCTCGATCCAAACGACAACATTCGTCCGCAAGGTGGAAAACTCTAGAAGATTCAATGGATATCAAGATTGAAGAACAGACTAATCATAACTGCGATTATTGTCATTCCCTGTTTGCCGACAAGCGTGAACTAGGGGTGCATCTCGCCAGCACACACTCAAAGTTGGTGTTCCACTGCGACAAATGCAACGAGGTCATAGTCGATGGCAGTAAGAGTGAGTTTGTGAAGCATATGCAGGACCACGGTGAAGATGTTAAACACAATCAACCCTTGTACCATAAAAGTTTCCCTTTGAAATCTATTCGCGGACTACCCAAAACGGTTAAAACTGTTATTAGAGAGAAAAACTTTAATTGTGATACATGtggaaaatgttttgtaagGAAGTTTGACATGGAGAGACACTCAAAAATTCACAGGCATATTCACAAAACCACTGTTAGTAATAATAGCTATTCCTGTCCATTATGTGATGAAATACTCAATAAGAAAACAGACTTACGtaaacatattcatacattccATGATTCTAAAGATCTTCAAAAcatgtttgcaaaaaaaatgaataaagaaagTGATGACCGTTTATCGAACACATCTGAGAGCGATGAAAACAAAATACCAGAAAAATTAGAAACCACAAAGCAATCAAATAGTGGATTATATCGATGTGGTATTTGCTTAAAATCCTACTCAAGGAAGTATGACCTGAAAAAACATCAGTGCAAACATTCTGAAGAAGAGAAACCAAGGGCCTGTAAAGAAAAGGTGCTGGTGGATGAAGATGGGGACTACAGCTATCTTTTGAGTCACACTAAACTCCCAGCAGCAAAAGGCAAGTCATCTCTCACGGCTGTTCCAGGAGAGGATGATAGTTTGTCTGATAACAGAGTGATGGTCGGAGATGTTGCGTTCTATCGCTGTGATAACTGTAACAAGCACTTCCATTCACGGTATCTCTTTGTGCGTCACCGACGCATTCACACAGGAGAAAAGCCGTTGACATGCCATGTCTGTGGCAAGCAGTTTCGCATCACTGTCCAGCTGAACCGCCACATTCGTGATGTCCACGAGGGAATCAAGAACTATCCTTGTGATATCTGTGGCCGCAAATTTGCTAATAGTCATGCACGCAACGATCACCGCCGCATCCACACAGGAGAACGTCCCTGTGTGTGTCACCTCTGTGGCAAGGCATTTAAGACAAAGGCGTCACTGTTTGTCCACTCAAAATTCCATGTGGATGTGTTCCCACACAAATGCTCGCACTGTGAGCGTGGTTTCCGTATGCGGCAGCAGCTTAATTCGCATGTGTTGCTACACACAGGCGAGAAACCTCATATATGCCAGTTTTGTAGCAAGAGTTTTCGGCTGAGTAAGACGCTTAAAGATCATGTGCTTATACACGTTAATAAAGGGAGCTATGAGTGTGCTGAGTGTGGCAAGCACTTTGCGCAGGAACGTTACTTGAAGAACCATGCCAGGAGTCATCGTGTCAATAGAGTTCAGGACATTCATTTGAATCCCGACACTTACACAGGACATCTGTTGACTGACCAATAA
- Protein Sequence
- MEFKTCPEKNSKKLIPHNCSSRWPRSKRQHSSARWKTLEDSMDIKIEEQTNHNCDYCHSLFADKRELGVHLASTHSKLVFHCDKCNEVIVDGSKSEFVKHMQDHGEDVKHNQPLYHKSFPLKSIRGLPKTVKTVIREKNFNCDTCGKCFVRKFDMERHSKIHRHIHKTTVSNNSYSCPLCDEILNKKTDLRKHIHTFHDSKDLQNMFAKKMNKESDDRLSNTSESDENKIPEKLETTKQSNSGLYRCGICLKSYSRKYDLKKHQCKHSEEEKPRACKEKVLVDEDGDYSYLLSHTKLPAAKGKSSLTAVPGEDDSLSDNRVMVGDVAFYRCDNCNKHFHSRYLFVRHRRIHTGEKPLTCHVCGKQFRITVQLNRHIRDVHEGIKNYPCDICGRKFANSHARNDHRRIHTGERPCVCHLCGKAFKTKASLFVHSKFHVDVFPHKCSHCERGFRMRQQLNSHVLLHTGEKPHICQFCSKSFRLSKTLKDHVLIHVNKGSYECAECGKHFAQERYLKNHARSHRVNRVQDIHLNPDTYTGHLLTDQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446929; iTF_01445086;
- 90% Identity
- iTF_01446929; iTF_01445086;
- 80% Identity
- -