Tgen023708.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- ZNF296
- Assembly
- GCA_902155825.1
- Location
- CABFWO010001784.1:118811-130960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.06 11 8.6 4.5 2 23 231 252 230 252 0.96 2 11 4.6e-06 0.00086 21.6 1.5 2 23 258 279 258 279 0.97 3 11 0.00017 0.031 16.7 0.8 1 21 285 305 285 306 0.95 4 11 0.006 1.1 11.8 0.6 1 23 333 355 333 355 0.98 5 11 0.00042 0.078 15.4 2.3 1 23 358 380 358 380 0.98 6 11 0.00016 0.029 16.7 0.5 2 23 389 410 388 410 0.96 7 11 0.00078 0.15 14.6 0.4 1 23 442 464 442 464 0.98 8 11 0.2 38 7.0 0.7 1 23 470 493 470 493 0.94 9 11 0.029 5.4 9.6 0.1 1 16 539 554 539 556 0.91 10 11 8.9e-06 0.0017 20.7 0.5 1 23 594 616 594 616 0.98 11 11 2.9e-07 5.3e-05 25.4 0.2 1 23 622 644 622 644 0.98
Sequence Information
- Coding Sequence
- ATGACTGTTAAGCATGCCACTGATACACTTTGGTTGCAGGTTTCCAAAAGAGATGGACTGCCGACACAGATATGTCGGCAATGCCTGCACAAGGTGAACTTGTGGCATGACTTCAAGCGGGTGTGCGATTCTTCGCAGGAGCGGCTGAAAGAATGGTTCAGTCAGAACCACACTCGGAACAACCAGCCGCGGGAGTCGGTTGAGCATGACAGGaTGATAGAAATCAAGCAAGAAGAAATTGAGGTTtgtgatgatgaagatgaagatgatgataaCGGTGACGCTGATGAATTTGTGAACGCCATTGAAGTTATTAATGACCCATTGAGCTTTCCctcttcaaaaaataataaaagtccaCTGCCACTCTCAAAGACTATAAAAATAGAACTTGAAGATCCTGATGTTCAACATGTGTATGATCATCCTGTTCTTATTGGTGATTATTCTGGAATTGAAAATGGGGACACTATTGATTTAAATGGTGTAAATCATAGTGGAGCTTTGTCAATGCAAGGCATATTTGATCCTGAAAGACCAATCAAGCTGGAAATTAATGACCAAATACCTAATCGTCGTAAAAggagaagaaaatatttcaaaaggaTCACAGTTAAGAAGAAACCTAAAATCAAACAAACACTTTGGGCTAACCCTAAAGATATAGTATCTAAAACGCAGGATGGATGCAAATGTAGAAAGTGTGGAGATTCCTTCCCAGATTTGTGTTCACTCAAGACTCATGAAAAGGTTCATGCTGCTGCAGAAAATGTTTGCACAATATGTGACAAACGCTATTCCAGCAAAGGTTGTCTGGTCCGACACATACGTATTCACACAGGGCAGAAGCCATATATTTGCTCCGTTTGTAAGAAGTCATTCCCGTACAAGTCTGCTTACACTCAGCATCGTAATAATTGCAGTGAATTAATTAATGCGACTGAAATCAAGAAAGAAATTGAACAAGATGAAGATAATTTGCCTAATGGAAATACTTATTCTTGTTATGTATGTGAAAAGCTGTTTCCGAATGTGAATCAAATGATCTCTCACAGGAGAAGTCATAGTTCTTTCTCATGTCATAAGTGTAAGAAGATGTTTGCTGGTGGAACTGGATTAAGCAACCATTTGCGAACACACACCAATGTGTTACACTCATACCTGTCGTGTTTTGTTTGTTGGAAATCTTTCAAGAGTAAACTAGCATTGGAGGTGCATAAAAGAGTGCACAAGAAAGTATTAAAACCTCCATCAATCGCTAAGACTGTTGACAACAGTAAACCACTACAAAACAATGCTGATGGGAAAAAACCAACGAATGGGTTTGTTTGTGAAGTCTGTGACAAGTGGTTTAAGggttttaatatgttaacaagACACATGATCTCTCACACAAAATCAAAGGAGTTTGCATGCACATTATGCAGCTCGACAATGGGCTATGCATCTTCTCTGCACAAACACATGCAGGTTGTCCACAAtgttaatattgattataaaaagaTCAAGCCTAATAATCTATCATCTCCTGCCATGAAGATTAATAAACCCAAGTTTATTACTGATGCATCTGCACAGATAACTGATCAGCAAACATCAACTCAATCAGGAAACCACGTATGCACTATATGCACTAAAAGCTTCCCCGAGAAGAGTATGTTGGGACAGTCGGTAAGTGAAGACCTGCCCAAGGTAAGAGCATTGATAAGTAATGTGGAACATTTCGACACAATAGAGTTGGAAAGCAAAGATCCTCTTGAAAAGGAGGGGAAAGAAGAATTTTCTTGCTCCTTATGCTCCAAAGTTTTCAAAATGGAAGAGTATTTAAAAGCTCACATTCGAATCCACACAGGAGAACGCCCATACCCTTGCGATCAATGTCCATTAGCATTTTCACGAGCTAGCAACCTATGGAAACACAAACGCACCCATGTCACACGACCATTCTCCTGCCAGATCTGTCGCAAAAGACTGGTATACTTTCATTATAAGTGGTACACAGGGCTGGGCTGTAAGCCCACGTCACTTGTTCCGCTCGTGGCGCTGGCCCAGAAATGGGTCGGACTCTGTGGGGCAGTGTAG
- Protein Sequence
- MTVKHATDTLWLQVSKRDGLPTQICRQCLHKVNLWHDFKRVCDSSQERLKEWFSQNHTRNNQPRESVEHDRMIEIKQEEIEVCDDEDEDDDNGDADEFVNAIEVINDPLSFPSSKNNKSPLPLSKTIKIELEDPDVQHVYDHPVLIGDYSGIENGDTIDLNGVNHSGALSMQGIFDPERPIKLEINDQIPNRRKRRRKYFKRITVKKKPKIKQTLWANPKDIVSKTQDGCKCRKCGDSFPDLCSLKTHEKVHAAAENVCTICDKRYSSKGCLVRHIRIHTGQKPYICSVCKKSFPYKSAYTQHRNNCSELINATEIKKEIEQDEDNLPNGNTYSCYVCEKLFPNVNQMISHRRSHSSFSCHKCKKMFAGGTGLSNHLRTHTNVLHSYLSCFVCWKSFKSKLALEVHKRVHKKVLKPPSIAKTVDNSKPLQNNADGKKPTNGFVCEVCDKWFKGFNMLTRHMISHTKSKEFACTLCSSTMGYASSLHKHMQVVHNVNIDYKKIKPNNLSSPAMKINKPKFITDASAQITDQQTSTQSGNHVCTICTKSFPEKSMLGQSVSEDLPKVRALISNVEHFDTIELESKDPLEKEGKEEFSCSLCSKVFKMEEYLKAHIRIHTGERPYPCDQCPLAFSRASNLWKHKRTHVTRPFSCQICRKRLVYFHYKWYTGLGCKPTSLVPLVALAQKWVGLCGAV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -