Tgen011929.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema genevievae
Gene Symbol
-
Assembly
GCA_902155825.1
Location
CABFWO010000655.1:180818-191619[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.3 4.3e+02 3.6 0.7 1 23 238 260 238 260 0.87
2 16 2.5 4.7e+02 3.5 3.2 1 21 283 303 283 305 0.78
3 16 0.058 11 8.7 0.5 2 23 312 334 312 334 0.92
4 16 0.0025 0.46 13.0 0.8 2 20 340 358 339 360 0.93
5 16 6.3e-05 0.012 18.0 1.1 1 23 388 411 388 411 0.98
6 16 0.37 69 6.1 0.1 2 23 421 442 420 442 0.95
7 16 0.0045 0.84 12.2 0.4 1 23 462 484 462 484 0.98
8 16 0.047 8.8 9.0 0.9 2 23 491 512 490 512 0.95
9 16 0.024 4.5 9.9 1.2 1 23 531 554 531 554 0.94
10 16 0.0038 0.71 12.4 0.1 1 23 571 594 571 594 0.96
11 16 4.8e-05 0.0089 18.4 0.3 1 23 599 621 599 621 0.98
12 16 1.4e-06 0.00025 23.2 1.1 1 23 627 649 627 649 0.99
13 16 0.00017 0.031 16.7 1.1 1 23 655 678 655 678 0.97
14 16 0.008 1.5 11.4 0.7 1 23 684 706 684 706 0.97
15 16 1.3e-07 2.5e-05 26.4 1.7 1 23 712 734 712 734 0.98
16 16 1.4e-05 0.0026 20.1 0.7 1 23 740 763 740 763 0.96

Sequence Information

Coding Sequence
ATGGTCGGTAAAATTGACATTGCTGCATCAGAGAATGAACGTTCATCTGAGGACAATGATATGGATTTGGAAAATTTAGAAAGTATTGATATGAGGTATCATGAATCTCTGTGCAGATTGTGTGCTTGTCACGTTGGAAATCCTGTTTACATCTTTGGGAAGGCTGGAAAGAATTTGAAGTTGGCTAACATGATCAATTGTAGTCTTCCCATCAGTgTTAATATCACAGACACCTTACCTAAGCAATTATGTTCATCCTGCATCGACAAACTAATAACTTGTCATAAGTTTGCAGAGTCTTGCATAGAAGCAGAGGAACGTCTAACGGTATTATCTAAATGGTCTCCAAACAAGTTGATTGAGCCCCAAAGGATTGAGTACCCTTCAGACCATCATAACTGCCCTTTATGTGTAAATGGAACAATAAAGGTTTTGGATAAGGCACCAAAAGAATTAGAAGATGCTGAAGAAATGGAATGCATGGTCGACATTGCGAATTATCATTGGCGCAATCATGAGAACAAAACAGACTCTGAGGAGGAGATGGAGGATGACAATTATTCGGATGATGATCAGAAAGGGAGCAAGTCTaaagataccaattttgaagaAAGCAAAGACACGATCTACATCTGCCGGGTGTGTGGCGAGTTATGCTCCACtgttagttttagttttgagCATTCATTGACGCACGCTGTGTCCGGTAACTATCCTTGCATCCTTTGTGATACAAACTTGACCGACAGAAGGGGACTTGAGAAACATTTTGTACACCATCGGAGTGAACAAACAACCAATGGTAGAGAATTCTCAAGAAGGGGGGAGTGGCAGAGAGACAAGACCTACAGGTGCAAGATTTGTGAAAAACTGTTTTACAAACGGGAGAGATATCTTTTCCACCAACAGTTTCATGATGGCGCCAGGGAGAATTATTGCGATATTTGTCACAAGGAGTACGGTAGTGAGTTGTTGCTGTTCCGTCATGTCAGCCAGATCCATGCTAACTTAGCATTAACTTGCCAAAATTGCGGAGAAGATTTTGACTCTCAATACACACTGGAAAATCATCGTTGTGATGAGAATAATGGGGCGTATAAGTGTGAAGAGCTTCCAAAGATGGACACTAAGGAACCTGATCACAAATCCCCTCAAGAGATGTATGTGTGTAATTTCTGTGAAACAAGCTTCGCTACCCAGAGGAAACTAAGTGGCCACATGAGGTCTCAGCATGGGCAGGTGGGATCCCAGCGGTGTATTCGCTGCAACACTTGCCAGGCCATATTCCCCGATATCAGCCAAACCATTATGCACACCAAGGCACACTTCTCTGGTTCCGAAGGAGGCAGTACAAGAGTGGAAGAGGTGTGTGCCACCAAACTGTTTGTCTGTGAATACTGTGAGACTTTCTTCGCCTCTGCAGAGATCCTCAATACTCATCGCAAGAGTCATACCAGCTCAAAGCCCTTCTTGTGTCGGTCATGCCCAGAGACGTTCTCTAACTTCACGCAGGCAGATGTCCACAGGCGTACACATTCCAACCCAAACCATCTTCATAACAGCAGCCATATGTTCACCATCCCTGTTGTGTTTCTATGTGAGGTGTGCAGCCGAGGTTTCAAGCTCTGGGAGAGTTTCCACATCCACCGTTTGAGGGATCACGAGAAGCTACACGAGTGTGGTCTTTGGTTGCAAGGGTCTGATGGGATCTATGAATGCGAACTCTGTCCCGACACTTTCGAGCAGAAGAAGCAGCTTCTTGGGCACATAAAGCTGGAACATCTCAAGAAGAAGTTTGAGTGCGACGAATGTGGCAAGgtGTTATCTCATATTTCTGGTTTGATCATCCACCGGCGACAGCACACAGGCGAGAAGCCGTATACGTGTGACGTGTGTGGGAAGTCGTTCAGGCAGAGTGCGGGTATGTACACCCACAGGCGCACGCACACCAAGGAGCACCCCTATTGCTGTGAGATCTGCGGGCAGGGCTTTAATGTGAAAGGAGACCTAGATAACCACCGACGCTCCAAACACACTAAAGAGCGCCCCTTCAAGTGCCCTGTCTGTCAAAAGGCGTTCCTCACCTCTGGTGTTTTCTACCAGCACAGGATGATGCACGCCGGCATCAAGAAGTACCACTGTCAATACTGCGGACGTGCCTTCTCACGATGGAATGCCCTTCGCTTGCACATCCGCACGCACACAGGTGAGAAGCCTTACCTGTGTGAGGTGTGCAATCGAGCGTTTGCTCAGAAGGGAGACATGAGGAAACATCGCCGCACTCAACACCCACCAGTTCAATAG
Protein Sequence
MVGKIDIAASENERSSEDNDMDLENLESIDMRYHESLCRLCACHVGNPVYIFGKAGKNLKLANMINCSLPISVNITDTLPKQLCSSCIDKLITCHKFAESCIEAEERLTVLSKWSPNKLIEPQRIEYPSDHHNCPLCVNGTIKVLDKAPKELEDAEEMECMVDIANYHWRNHENKTDSEEEMEDDNYSDDDQKGSKSKDTNFEESKDTIYICRVCGELCSTVSFSFEHSLTHAVSGNYPCILCDTNLTDRRGLEKHFVHHRSEQTTNGREFSRRGEWQRDKTYRCKICEKLFYKRERYLFHQQFHDGARENYCDICHKEYGSELLLFRHVSQIHANLALTCQNCGEDFDSQYTLENHRCDENNGAYKCEELPKMDTKEPDHKSPQEMYVCNFCETSFATQRKLSGHMRSQHGQVGSQRCIRCNTCQAIFPDISQTIMHTKAHFSGSEGGSTRVEEVCATKLFVCEYCETFFASAEILNTHRKSHTSSKPFLCRSCPETFSNFTQADVHRRTHSNPNHLHNSSHMFTIPVVFLCEVCSRGFKLWESFHIHRLRDHEKLHECGLWLQGSDGIYECELCPDTFEQKKQLLGHIKLEHLKKKFECDECGKVLSHISGLIIHRRQHTGEKPYTCDVCGKSFRQSAGMYTHRRTHTKEHPYCCEICGQGFNVKGDLDNHRRSKHTKERPFKCPVCQKAFLTSGVFYQHRMMHAGIKKYHCQYCGRAFSRWNALRLHIRTHTGEKPYLCEVCNRAFAQKGDMRKHRRTQHPPVQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01445890;
90% Identity
iTF_01445890;
80% Identity
-