Tgen026305.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002107.1:28504-43911[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.2 38 7.0 0.7 10 23 2 15 1 15 0.92 2 19 8.6e-08 1.6e-05 27.0 2.7 1 23 21 43 21 43 0.98 3 19 2e-05 0.0038 19.6 5.4 1 23 69 91 69 91 0.98 4 19 0.068 13 8.4 5.3 2 23 98 119 95 119 0.93 5 19 2e-05 0.0038 19.6 5.4 1 23 125 147 125 147 0.98 6 19 0.068 13 8.4 5.3 2 23 154 175 151 175 0.93 7 19 0.0055 1 11.9 0.4 2 20 182 200 181 203 0.92 8 19 0.00011 0.021 17.2 2.6 3 23 211 231 211 231 0.99 9 19 7.2e-05 0.014 17.8 3.4 1 23 237 259 237 259 0.98 10 19 5.6e-05 0.01 18.2 6.3 2 23 266 287 263 287 0.94 11 19 0.012 2.3 10.8 2.7 1 23 293 315 293 315 0.97 12 19 0.19 36 7.0 1.8 1 23 325 344 325 344 0.92 13 19 0.003 0.57 12.7 1.3 1 23 350 372 350 372 0.95 14 19 0.00013 0.024 17.0 4.0 2 23 379 400 379 400 0.97 15 19 4.1e-07 7.6e-05 24.9 1.4 1 23 406 428 406 428 0.97 16 19 0.19 36 7.0 1.8 1 23 463 482 463 482 0.92 17 19 0.003 0.57 12.7 1.3 1 23 488 510 488 510 0.95 18 19 0.11 20 7.8 5.6 2 23 517 538 517 538 0.97 19 19 1.1 2e+02 4.7 0.6 1 13 544 556 544 562 0.85
Sequence Information
- Coding Sequence
- ATGTTTGCCCGGATGACGACTCTACGTGTTCACATGCGCACGCACACGGGAGAGAAACTTTACAGTTGTAAAGATTGCGGCAAGAGGTTTACTCAGAGCAGCACGCTCACCATACATAGACGCTACCATACGGGGGAGAGACCCAAATTCAGAACAACGTTTGATCTTCGGTGTCACAAAAGATTGCATACAGGGGAGGGAGTTTTCACCTGTGACAAGTGCAATAAGACATTTGTACACAAAAGTATGTTGCTGAACCACTATAAATATCATGACAAGGAGTATTCTTGTTTTTGTGATTTGTGTGACAAAGGCTTCTACTGTAAAAGCCAACTTTTGATCCACAAAAACACCCACACAGGGGAGGGAGTTTTCACCTGTGACAAGTGCAATAAGACATTTGTACACAAAAGTATGTTGCTGAACCACTATAAATATCATGACAAGGAGTATTCTTGTTTTTGTGATTTGTGTGACAAAGGCTTCTACTGTAAAAGCCAACTTTTGATCCACAAAAACACCCACACAGACCAAAACGAATGGGTCTGTCCCACTTGCAAAAGGAAGTTCGCAATAAAGAAATACTTGCTGCGGCACTTGCCAAGCCACGTGCTCGGGAGGAACCTGGGCTGCGAGACGTGTGGTCGCAAATTTAGGAAACAGTTTGAGCTGCGGTCGCATAAAAGGATTCACACTGGAGAAGGCGTGTACACTTGCGTCAAGTGTGGGAAAAAGTTTGTCCACAAAAGCATTTTGAACAACCACTTGAGATATCACGCCAAGGAATATTCATGCACTTGCAACATCTGCGGTAAAGGCTTCCACCATAAAAGCCAACTCGATGAGCACATGAATAAACACACGGGGGAACGAACGTTCTCCTGCGATATTTGTGGAAAGTGCTACTTGATCAAGAGCAGTCTTTCTTACCACAAGAAAGTTCACACCGGAGAGAACAAAAACACAGTAAAACACGAGTGCGTTGTTTGCGGCAAGTTCTACGTGAACCTGACTATACATCTGAAACGCCACACGGGGGAACGTAACTTCCTGTGCGATCTGTGCGGGAAGAAGTTCCTTGATAAGAAGAGTGTGCAACTGCACCGAAGGATGCACACCGGAGAGAAACCGGAGGTGTGTCACATTTGTGGTAAAGCTTTTGCCCGGATGACGACACTGCGCTGCCATATGCGCACCCATACAGGAGAGAAACTCTACGCATGCACCGAGTGTGACAAGAAGTTTACTCAGAGAAGCGCTCTCACTATACATCGACGCTACCATACGGGAGAAAGACCGTACCCTTGTAACGCCTGTGAGAAGAAAGCAAACAGTCTTTCTTACCACAAGAAAGTTCACACGAGAGAGAACAAAAACACAGTAAAACACGAGTGCGTTGTTTGCGGCAAGTTCTACGTGAACCTGACTATACATCTGAAACGCCACACGGGGGAACGTAACTTCCTGTGCGATCTGTGCGGGAAGAAGTTCCTTGATAAGAAGAGTGTGCAACTGCACCGAAGGATGCACACTGGAGAGAAACCGGAAGTGTGCCACATTTGCAGGAAAACTTTCGCCTGGAAGATGACTCTGCGCTGCCATATGCGCACCCATACAGGAAAGAAAAACTATGTGTGCATCGAGTGTGACAAAAAGTTTACTCAGAGATGTGTTATCATCATACATTGA
- Protein Sequence
- MFARMTTLRVHMRTHTGEKLYSCKDCGKRFTQSSTLTIHRRYHTGERPKFRTTFDLRCHKRLHTGEGVFTCDKCNKTFVHKSMLLNHYKYHDKEYSCFCDLCDKGFYCKSQLLIHKNTHTGEGVFTCDKCNKTFVHKSMLLNHYKYHDKEYSCFCDLCDKGFYCKSQLLIHKNTHTDQNEWVCPTCKRKFAIKKYLLRHLPSHVLGRNLGCETCGRKFRKQFELRSHKRIHTGEGVYTCVKCGKKFVHKSILNNHLRYHAKEYSCTCNICGKGFHHKSQLDEHMNKHTGERTFSCDICGKCYLIKSSLSYHKKVHTGENKNTVKHECVVCGKFYVNLTIHLKRHTGERNFLCDLCGKKFLDKKSVQLHRRMHTGEKPEVCHICGKAFARMTTLRCHMRTHTGEKLYACTECDKKFTQRSALTIHRRYHTGERPYPCNACEKKANSLSYHKKVHTRENKNTVKHECVVCGKFYVNLTIHLKRHTGERNFLCDLCGKKFLDKKSVQLHRRMHTGEKPEVCHICRKTFAWKMTLRCHMRTHTGKKNYVCIECDKKFTQRCVIIIH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -