Tgen040493.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010004636.1:41935-45069[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.4e-07 0.00012 24.3 5.1 1 23 169 191 169 191 0.99 2 8 1.1e-08 2e-06 29.8 1.0 1 23 197 219 197 219 0.98 3 8 7.7e-06 0.0014 20.9 2.6 1 23 226 248 226 248 0.98 4 8 2.3e-05 0.0043 19.4 0.5 1 23 276 298 276 298 0.96 5 8 1.2e-05 0.0023 20.2 4.4 1 23 304 326 304 326 0.97 6 8 9.8e-07 0.00018 23.7 1.2 1 23 356 378 356 378 0.96 7 8 4.3e-05 0.008 18.5 0.3 1 23 384 406 384 406 0.96 8 8 1.2e-06 0.00023 23.4 2.1 1 23 412 434 412 434 0.94
Sequence Information
- Coding Sequence
- ATGACGTCTGAAATAAGAGAAGAAATAGAGAATAACGTTTCCGTCCCTTCCGACAAACCGGCAGCACTCACCTTTTCTTCTGTGAATGAACTCGAGGACGCAAGTCAACATATTCCTGTCCACTTCTTACTGCGTAGCGATGACGAGATGTATGGGCTCCACGATATTGTTAAACCATTACCTGGTTCCAATCTGACCGAATCCACTACACATTtgattaaaagatttaaaatcaaACGTAGATTTAAAGAAGGGGTGAAAGTGAATAAGATCCACTCTAACGAAAGCGAGAAGGAAAAGACTGAAAATATTATCGGCAAGCAAGACGGTGCGGATCCGATGGTCTTCAGcgataaacaaacaaacacatcttTCTTACAGCAAGTGATAAAAGAAATCGAACATGATAGATGCAAGCCAATCTCTAAGAACGGAAAGGGTGATAATTTACCTAAACTAACACCATCTTCGTCCAACAAGAGCAGCCTTGTCAAACAGGAAATATTCAAATGTAACGACTGCGACAAATGCTTCTCGCGCAAGCAGAACTTTGTCGAGCATTACAGAGTCCACAGTAAACTCAAACCTTACATATGTAAGGAGTGCGGCAAGGGTTTCTCCACTTCGAGCAACCTTAAGCGGCACGTGACCACCCACAGTAACGGacagataaaatacaaatgtgagAAATGTGGTACTATGTTCAACCAGGCCGACCATCTAAGTGAACACCTCCACGTGCATAGGAAACCTGACCCTCGGGAGAGCGAAGAGTCGAGTAAAACGTCTCTTCTGCATAACCTCATGAACAGTCAACAGAAACCTCATAAATGTGAAGCGTGCGGCAAAGGCTTCATCACGCCGAGCAAGCTCGAGCGACATAACCTCATTCACAGCGGGGAGAAGCCGCACAGGTGTGAAGAGTGCGGGAGGTGCTTCAGCCAGGTCAGCCACCTGCGCGGACACCTGCTTGTCCACAGCGCTCAGATAAACGACAAGTTGGGCACCACTTCCCCCGCCACCATCAAACTTATCCACGGTTTGTTTCAAAACCAACAGAAACAGTACAAGTGCGAGGAGTGCGGTAAGGGCTTCGTCACCCGCAGCAAACTCAACAGACACGGGTTCCGACATACCGGACAGAAGCCGCACAAGTGTGACGTTTGCGGTAAGTATTTCGGCGATGTTGGTAACTTGAGGCAACACCTGGTGATTCATAGCGGCATTAAGCCTTACAAATGTGAAGTGTGTGGTAAATGTTTCAACGTGAAGAAGAACCTGAGGCGGCACGGCGTTGTCCACAGCGGACAACCCTCCTAA
- Protein Sequence
- MTSEIREEIENNVSVPSDKPAALTFSSVNELEDASQHIPVHFLLRSDDEMYGLHDIVKPLPGSNLTESTTHLIKRFKIKRRFKEGVKVNKIHSNESEKEKTENIIGKQDGADPMVFSDKQTNTSFLQQVIKEIEHDRCKPISKNGKGDNLPKLTPSSSNKSSLVKQEIFKCNDCDKCFSRKQNFVEHYRVHSKLKPYICKECGKGFSTSSNLKRHVTTHSNGQIKYKCEKCGTMFNQADHLSEHLHVHRKPDPRESEESSKTSLLHNLMNSQQKPHKCEACGKGFITPSKLERHNLIHSGEKPHRCEECGRCFSQVSHLRGHLLVHSAQINDKLGTTSPATIKLIHGLFQNQQKQYKCEECGKGFVTRSKLNRHGFRHTGQKPHKCDVCGKYFGDVGNLRQHLVIHSGIKPYKCEVCGKCFNVKKNLRRHGVVHSGQPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446870;
- 90% Identity
- iTF_01445886;
- 80% Identity
- -