Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010002400.1:83324-85114[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.3 1.2e+03 2.3 0.0 3 23 140 161 138 161 0.88

2 15 0.1 20 7.9 2.4 2 23 167 187 166 187 0.95

3 15 0.00024 0.044 16.2 0.3 2 23 192 213 192 213 0.94

4 15 3.9e-06 0.00072 21.8 2.3 1 23 219 241 219 241 0.96

5 15 0.00094 0.18 14.3 1.7 3 23 249 269 247 269 0.95

6 15 0.0036 0.68 12.5 0.5 1 23 278 300 278 300 0.97

7 15 5.3e-07 0.0001 24.5 0.3 1 23 308 330 308 330 0.98

8 15 0.17 31 7.2 4.8 1 23 336 358 336 358 0.98

9 15 0.00014 0.026 16.9 0.3 2 23 391 412 390 412 0.97

10 15 0.00073 0.14 14.7 0.9 2 23 420 441 419 441 0.97

11 15 0.0061 1.1 11.7 5.3 1 23 447 469 447 469 0.97

12 15 0.016 3 10.4 3.4 1 23 475 497 475 497 0.96

13 15 1.6e-06 0.0003 23.0 3.2 1 23 503 525 503 525 0.99

14 15 1.9e-05 0.0036 19.6 0.2 1 23 531 553 531 553 0.97

15 15 0.0043 0.8 12.2 1.6 5 23 562 580 561 580 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.3	1.2e+03	2.3	0.0	3	23	140	161	138	161	0.88
2	15	0.1	20	7.9	2.4	2	23	167	187	166	187	0.95
3	15	0.00024	0.044	16.2	0.3	2	23	192	213	192	213	0.94
4	15	3.9e-06	0.00072	21.8	2.3	1	23	219	241	219	241	0.96
5	15	0.00094	0.18	14.3	1.7	3	23	249	269	247	269	0.95
6	15	0.0036	0.68	12.5	0.5	1	23	278	300	278	300	0.97
7	15	5.3e-07	0.0001	24.5	0.3	1	23	308	330	308	330	0.98
8	15	0.17	31	7.2	4.8	1	23	336	358	336	358	0.98
9	15	0.00014	0.026	16.9	0.3	2	23	391	412	390	412	0.97
10	15	0.00073	0.14	14.7	0.9	2	23	420	441	419	441	0.97
11	15	0.0061	1.1	11.7	5.3	1	23	447	469	447	469	0.97
12	15	0.016	3	10.4	3.4	1	23	475	497	475	497	0.96
13	15	1.6e-06	0.0003	23.0	3.2	1	23	503	525	503	525	0.99
14	15	1.9e-05	0.0036	19.6	0.2	1	23	531	553	531	553	0.97
15	15	0.0043	0.8	12.2	1.6	5	23	562	580	561	580	0.97

Sequence Information

Coding Sequence: ATGAAACTAGAACCAGAAATTCAGATTAATGAAGATTCTGATGATTCAGATAAGTTCGgggttggtgatgatgattatgatgatgatgatgatgatgatgatgatgatgtgggAGAGGAATACAGTGAAGTAATATCTGGCATCAAGGAAGAGAAAAATGACcagaaaaccaaattaaatgcTTCAAGATCTGATTCGACTGCTGTGAGTCCACATGAACCCCTCTCCAATGGCTTAAAGGCAAGTAAACATTCAGAACTGGACACAAGAGAGACaactgaaaaaaagtttgttatagaTCCGCTAACGTCTGATCTCTCCGGGGAACATCACACTGATGGGACTTCTATCGACCCAGAAATGGTGACACTAGACTTAGCCAGCTCACCGGTGAGTACAGAAGAGCAGGGACTCGCCTGTGACGCTTGCCAAGCAGTGTTTCCGACTGTTCTCTCTTTGGTTACGCATAAGATAGAATCACATAAATCCACCAAGATGCGATGCAAGTATTGCAACACAGAATGTGACAAAGATCAACTGGAGACACATGAAGACAGTCACAACCTACCGGCGGTGTGTCCTGTTTGTTGGAAAAGCTTTGGTTCAGACAGTAGTTTGAAGCGACACTTTATTCAACACAAAAGGGCAAACATTCACATCTGTACCATGTGCGTGAAGGTCTTTTCGACCAAAAGTAAACTGAGGGCACACATGTCTAGTCATATGAAGGAGAAACGACACTTGTGTGAGACATGTGGGAAGGAATTCAAATACAGGAATGCCATGATGCAACATGCCCAGACTCACTTGGATGACGAAAAGAGGGAGAAATTCAAGTGTGATGTTTGCAATACTCTTTTCAAAAGCAAACCTATCCTTAAAAATCACATGGCTCTTCACAATGAAGCGAGAGAGagtaaatatgtgtgtgaaaTATGTGGTAAGAAGTTTTTTAAACCCTACAGCTTGAAGGTACACATTCAAGTTCATTATGACGAGCGCCCTTTCAAGTGCACTTGCTGTGACATGGCATTCAAGTGGAAGAAGAACTTAGACAACCATAAAAGAACTCACGGGATTGGCGCTGACAGAAATGGAAAATCCATCAGACCTCCTAGGAACAATAAGCCCCTTAAGGACAGACGGCCACGAGAGGTAATGCCTAGAGTGCAATGTGAAATTTGTGGCAAGTCCCTTGCATCAAAGGCAAGTCTCCAGTTTCATATGAAACGTCATAATGGGATTGTGACGGAGCTAGTCTGCGAGATATGCGGTAAGACCATGTGTAGTTCCCAGGCGATGAACAGACACCTCAAGATCCATCAGGGCATCAAACCGTTCCAGTGCAAGTTCTGTGGGCGCACATTTCGTACCAAGATCTGCCGCGATGACCATGAGAGAACACATACCGGAGAAAAGCCTTTTCGCTGCGATTTCTGCGGCAAGTGTTTTGGCTGTAAACCTCTCCTGACAGTGCACCGAGCCATTCACCTGGACCTACGACCATACACCTGCTCATATTGCTCCAAGGCATTTAGGCGCCGGCCACATCTCGTGCAGCATGTTCGAACACACACAGGGGAAAAGCCCTTTGCCTGTGAGATCTGTTTGCGGGCATTCGCCCAAAAAGGTGACATGACAAAACACATGCTGACCCACTCAGAAGAACGCCCCTTTATTTGCGAGTGTGGTGTGAGCTTTCGTCAGAAGAGGGACCTTGACAAACATAAGAAAAAACACACTGAAGGGGAGCCGAGCTTCCTGACCTCTTTGCAGCAGCCCAACTTTTAG
Protein Sequence: MKLEPEIQINEDSDDSDKFGVGDDDYDDDDDDDDDDVGEEYSEVISGIKEEKNDQKTKLNASRSDSTAVSPHEPLSNGLKASKHSELDTRETTEKKFVIDPLTSDLSGEHHTDGTSIDPEMVTLDLASSPVSTEEQGLACDACQAVFPTVLSLVTHKIESHKSTKMRCKYCNTECDKDQLETHEDSHNLPAVCPVCWKSFGSDSSLKRHFIQHKRANIHICTMCVKVFSTKSKLRAHMSSHMKEKRHLCETCGKEFKYRNAMMQHAQTHLDDEKREKFKCDVCNTLFKSKPILKNHMALHNEARESKYVCEICGKKFFKPYSLKVHIQVHYDERPFKCTCCDMAFKWKKNLDNHKRTHGIGADRNGKSIRPPRNNKPLKDRRPREVMPRVQCEICGKSLASKASLQFHMKRHNGIVTELVCEICGKTMCSSQAMNRHLKIHQGIKPFQCKFCGRTFRTKICRDDHERTHTGEKPFRCDFCGKCFGCKPLLTVHRAIHLDLRPYTCSYCSKAFRRRPHLVQHVRTHTGEKPFACEICLRAFAQKGDMTKHMLTHSEERPFICECGVSFRQKRDLDKHKKKHTEGEPSFLTSLQQPNF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445029;
90% Identity: iTF_01445029;
80% Identity: -