Tgen013775.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- -
- Assembly
- GCA_902155825.1
- Location
- CABFWO010000806.1:100391-110757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0012 0.22 14.0 0.7 3 23 274 294 272 294 0.96 2 14 0.00028 0.052 16.0 2.0 2 23 301 322 300 322 0.97 3 14 2.1e-05 0.004 19.5 1.2 1 23 328 350 328 350 0.99 4 14 0.00017 0.033 16.6 0.2 1 23 358 380 358 380 0.97 5 14 0.00032 0.059 15.8 1.6 1 23 386 408 386 408 0.98 6 14 0.0073 1.4 11.5 0.4 2 23 418 438 417 438 0.95 7 14 1.8e-05 0.0034 19.7 0.8 2 23 443 465 443 465 0.97 8 14 0.00044 0.082 15.4 3.7 1 23 471 493 471 493 0.98 9 14 0.024 4.6 9.9 1.5 1 19 504 522 504 524 0.94 10 14 0.00018 0.033 16.6 0.6 1 23 535 557 535 557 0.98 11 14 1.2e-05 0.0023 20.2 0.4 1 23 563 585 563 585 0.97 12 14 0.00045 0.084 15.3 0.5 1 23 591 613 591 613 0.91 13 14 0.00042 0.079 15.4 3.4 1 23 627 649 627 649 0.96 14 14 7.7e-06 0.0014 20.9 1.4 1 23 655 677 655 677 0.98
Sequence Information
- Coding Sequence
- ATGGCAAGGAGTTACGTTGAACTTCTCATTGACATGGCGGGAGTTTTAAAGTTTGACACCTTTTCAGACACTAAGATCGAGTACATAGATGATTTAGCTTACTTGTCGTGGTGTAACCATCAGGAGGTCATTCTTGGTAACCTGTGGGGTTTGCGGGATGACCCTTCCCATGGATATTTCAGGAAATTGGCAGAACATATCTGTGAAGATATGAAAGATATTGTCGTCTTGGTGAAGGACTTGACGAGTCAGGACTTGCAAGCCTTCCTGGACTATATCTATAAAGGCGAAGTAGAGTTCTGCGGTAGTGAAGAGGAGTTCAAAGCCGTCATGTCTGGATGGATTGACTTTGACATGTTGCCAATCTGTGATGCTCAACCTTGCCTGCCTTTGAGTGGTGTGTTAGTGGAGGAGTTGTCCCTTCATAGCTTGAAAGatgatgaacttttaaaaaatgagcaTCTAAATATGGGGAGCAATATCTCTACCCTCATCAGTACCAACACAGAAAGTAGCTCTCCATTAATGGAGACAGATGCATCACCTCTGCCTGAAACGTATTTACCGATCTCCAAGCCTAAGTACTCGATAGCACAGGACACACCTCAAAACAAGGTTTCTTTAGCCCTGTCAGAAACATCAGATGACATGACCAAATTGAAGTATTGTGAGATGGAGGATGCTTCATCCATAGAAAATGGCTTACCTGGTACTGTGAAGGATTTATCACTTAATGCGGAAGACATTGTTGGATTGGAGGTCCCAGAGCACAAGAACAAGGTGGATGAGGGACAGGAGGTGAGGAGTAGTGCTGACATTTGCCAGACTTGCCAGCTCCAGTTCGACAGCCGGTCAGACTTCAGGAAGCACCTCTTAGTGCACCCTGATGGGAAGATGCTTAGGTGCGAGTACTGCTCCAAGGGCTTCCTCAAGCCCAGCCATCTGAAAATTCACCTCCGTTCTCATACCGGGGCACGTCCATTCCAGTGCCAGTCCTGTGGGAAACAGTTAATTTCGAAGAGCTCGCTCACGAAACACCTTCTAACCCACAAGAGGAACAAGGAAGATATGTTCGCATGTGATATATGTTCCAAGTCTTTCCTCTCAAAGGAATACCTCGCGGAACATATCCGTGTTCACACAGGTTCCAAGCCTTTTCAGTGCTCTCAGTGCCCAATGAGTTTTGTTGGGCGGACAGGTTTGaaccaccatgtgaagaaacaTGCCAAGGAGGAAGATAAGAATGATACAGTCTGCGATATATGTGGGAAAACCTTGTCTCGACATGCTCTATGGGGACACATAAAATCCCACAAGAAGATGGAACGTTGTGACCTTTGCGGCAAGGTCTTCTCGACAACAACAGCCCTGAAGATTCACTCAAGGACATCCCACTTGGGCCAGAGGGACCACCAGTGTGAGAAATGcggcaaaatatttttgcagGGGAGCCACCTTTCCAGGCACATAAAGTCGCACACACCTAAGCCTCAGCAAACAAAGGGGAATTTCTCCTGCAAGGAATGTTTAAAGACATTCAAGAAGGAGAACAGTCTCTTGTATCACAAAGAATGTGAGCATAAGGAACCAGGTGAATGTATCTATCCTTGTGACTTCTGTCCTAAACGTTTTGTCGGTCGTAGTACAGCCACCTACCACATGAGGTCCCACACAGGTACTCGTCCCCATGTCTGCACGAGCTGTGGTAGAGGGTTCATCCGCCCTGACTCGCTCAGGCTACACATGGCGAGGCACCGTGGTGAGAAGCCGTATGCTTGTTTAGTTTGTGGCCGCAAGTTCACCAGCAAAAGGTCTATGAACAAACATGCGGGTCTTCATAAAGCTGCACCTCCTCTCGATAAACACCTCGCTGTGCCTCATCATTGTGGGATCTGTAAAAAAAGCTTTGAGACAGAAGATGAACTAACAAATCACTCACAGAGCCACGTTGGTGCAAGGCCGTTTCGCTGCGCCGTTTGCCGCAAAACTTTCCGTTATCTGGATAGTCTTAAAAGACATGCTAGAGTACATTCTACGGTGGTTCCTGATGCCCCTATTGAGCTCCAAACATTGTATGCACTACAAGTCAGTGAGCAGCCACTTGAACAGGTCGGTGAATTGAATGAGGGAGGAAAGTTGACACCACAACAAAGTTATATGAGTGAGACGGTAATAGAAGTCAGTGAAGATCTTATTTCGACTGGCCACAAAGAGATAATTATTTCTGACAGTGTTGTAATGGAGGATGGAATATGTTTGTCTGTAGTAGAAGGTAAGACTAGCCTTGGTATGAGCTTGGCACCAAGGAGACCTTACAGCATAACAATTGATGGTAATCTTTGTTGTAACACTGACAACTCTGTACTTGACTTAATCCCTCAAGTCAGTGAAATCTCAGTTATTTCCTCAGTACCTCTAGAGTCTTCTCCACCACTTCAGTATCCAAACAAGCCCTGGAACTTCCCGCATTAG
- Protein Sequence
- MARSYVELLIDMAGVLKFDTFSDTKIEYIDDLAYLSWCNHQEVILGNLWGLRDDPSHGYFRKLAEHICEDMKDIVVLVKDLTSQDLQAFLDYIYKGEVEFCGSEEEFKAVMSGWIDFDMLPICDAQPCLPLSGVLVEELSLHSLKDDELLKNEHLNMGSNISTLISTNTESSSPLMETDASPLPETYLPISKPKYSIAQDTPQNKVSLALSETSDDMTKLKYCEMEDASSIENGLPGTVKDLSLNAEDIVGLEVPEHKNKVDEGQEVRSSADICQTCQLQFDSRSDFRKHLLVHPDGKMLRCEYCSKGFLKPSHLKIHLRSHTGARPFQCQSCGKQLISKSSLTKHLLTHKRNKEDMFACDICSKSFLSKEYLAEHIRVHTGSKPFQCSQCPMSFVGRTGLNHHVKKHAKEEDKNDTVCDICGKTLSRHALWGHIKSHKKMERCDLCGKVFSTTTALKIHSRTSHLGQRDHQCEKCGKIFLQGSHLSRHIKSHTPKPQQTKGNFSCKECLKTFKKENSLLYHKECEHKEPGECIYPCDFCPKRFVGRSTATYHMRSHTGTRPHVCTSCGRGFIRPDSLRLHMARHRGEKPYACLVCGRKFTSKRSMNKHAGLHKAAPPLDKHLAVPHHCGICKKSFETEDELTNHSQSHVGARPFRCAVCRKTFRYLDSLKRHARVHSTVVPDAPIELQTLYALQVSEQPLEQVGELNEGGKLTPQQSYMSETVIEVSEDLISTGHKEIIISDSVVMEDGICLSVVEGKTSLGMSLAPRRPYSITIDGNLCCNTDNSVLDLIPQVSEISVISSVPLESSPPLQYPNKPWNFPH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -